CRAN Package Check Results for Package genMOSS

Last updated on 2019-01-19 00:46:26 CET.

Check Details

Version: 1.2
Check: R code for possible problems
Result: NOTE
    MOSS_GWAS: no visible global function definition for ‘complete.cases’
    MOSS_GWAS_main: no visible global function definition for ‘rbinom’
    MOSS_GWAS_main: no visible global function definition for ‘na.omit’
    MOSS_GWAS_main: no visible global function definition for ‘glm’
    MOSS_GWAS_main: no visible global function definition for ‘poisson’
    MOSS_Hierarchical: no visible global function definition for
     ‘as.formula’
    MOSS_Hierarchical: no visible global function definition for ‘rbinom’
    cvFunc: no visible global function definition for ‘na.omit’
    findDualGenerators: no visible global function definition for ‘na.omit’
    findGenerators: no visible global function definition for ‘na.omit’
    findLogMargLik: no visible global function definition for ‘na.omit’
    findModel: no visible global function definition for ‘as.formula’
    findNeighbours: no visible global function definition for ‘na.omit’
    fitInteractionModels: no visible global function definition for
     ‘na.omit’
    fitInteractionModels: no visible global function definition for ‘glm’
    fitInteractionModels: no visible global function definition for
     ‘poisson’
    getSubsets: no visible global function definition for ‘na.omit’
    logLaplace: no visible global function definition for ‘as.formula’
    logLaplace: no visible global function definition for ‘model.matrix’
    logLaplace: no visible global function definition for ‘glm’
    logLaplace: no visible global function definition for ‘poisson’
    mWindow: no visible global function definition for ‘complete.cases’
    prettyFormula: no visible global function definition for ‘na.omit’
    randomHierModel: no visible global function definition for ‘rbinom’
    recode_data: no visible global function definition for ‘complete.cases’
    Undefined global functions or variables:
     as.formula complete.cases glm model.matrix na.omit poisson rbinom
    Consider adding
     importFrom("stats", "as.formula", "complete.cases", "glm",
     "model.matrix", "na.omit", "poisson", "rbinom")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.2
Check: compiled code
Result: NOTE
    File ‘genMOSS/libs/genMOSS.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.2
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'User_manual.tex' failed.
    LaTeX errors:
    ! Package babel Error: Unknown option `USenglish'. Either you misspelled it
    (babel) or the language definition file USenglish.ldf was not fo
    und.
    
    See the babel package documentation for explanation.
    ! Package babel Error: You haven't specified a language option.
    
    See the babel package documentation for explanation.
    Type H <return> for immediate help.
     ...
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64