Bayesian synthetic likelihood (BSL, Price et al. (2018) <doi:10.1080/10618600.2017.1302882>) is an alternative to standard, non-parametric approximate Bayesian computation (ABC). BSL assumes a multivariate normal distribution for the summary statistic likelihood and it is suitable when the distribution of the model summary statistics is sufficiently regular. This package provides a Metropolis Hastings Markov chain Monte Carlo implementation of BSL, BSLasso and semiBSL. BSL with graphical lasso (BSLasso, An et al. (2018) <https://eprints.qut.edu.au/102263/>) is computationally more efficient when the dimension of the summary statistic is high. A semi-parametric version of BSL (semiBSL, An et al. (2018) <arXiv:1809.05800>) is more robust to non-normal summary statistics. Extensions to this package are planned.
Version: | 2.0.0 |
Depends: | R (≥ 3.4.0) |
Imports: | glasso, ggplot2, MASS, mvtnorm, copula, cvTools, graphics, gridExtra, foreach, coda, Rcpp, methods |
LinkingTo: | Rcpp, RcppArmadillo |
Suggests: | elliplot, doParallel |
Published: | 2019-01-16 |
Author: | Ziwen An |
Maintainer: | Ziwen An <ziwen.an at hdr.qut.edu.au> |
License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
NeedsCompilation: | yes |
Materials: | NEWS |
CRAN checks: | BSL results |
Reference manual: | BSL.pdf |
Package source: | BSL_2.0.0.tar.gz |
Windows binaries: | r-devel: BSL_2.0.0.zip, r-release: BSL_2.0.0.zip, r-oldrel: BSL_2.0.0.zip |
OS X binaries: | r-release: BSL_2.0.0.tgz, r-oldrel: BSL_0.1.1.tgz |
Old sources: | BSL archive |
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