Performs network enrichment analysis against functional gene sets. Benchmarks networks. Renders raw gene profile matrices of dimensionality "N genes x N samples" into the space of gene set (typically pathway) enrichment scores of dimensionality "N pathways x N samples".
| Version: | 1.5 |
| Depends: | R (≥ 3.0.0) |
| Imports: | stats, utils, ROCR, graphics, parallel, hexbin, MASS, RColorBrewer |
| Suggests: | knitr, rmarkdown, tinytex, data.table |
| Published: | 2018-03-21 |
| Author: | Andrey Alexeyenko [aut, cph, ths], Ashwini Jeggari [aut, cre] |
| Maintainer: | Ashwini Jeggari <ashwinipriya.jeggari at ki.se> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| CRAN checks: | NEArender results |
| Reference manual: | NEArender.pdf |
| Vignettes: |
NEArender R-package |
| Package source: | NEArender_1.5.tar.gz |
| Windows binaries: | r-devel: NEArender_1.5.zip, r-release: NEArender_1.5.zip, r-oldrel: NEArender_1.5.zip |
| OS X binaries: | r-release: NEArender_1.5.tgz, r-oldrel: NEArender_1.5.tgz |
| Old sources: | NEArender archive |
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