REIDS: Random Effects for the Identification of Differential Splicing

Contains the REIDS model presented in Van Moerbeke et al (2017) <doi:10.1186/s12859-017-1687-8> for the detection of alternative splicing. The method is extended by incorporating junction information for the assessment of alternative splicing. The vignette introduces the model and shows an example work flow.

Version: 0.1.0
Depends: R (≥ 2.10), aroma.affymetrix, aroma.core, GenomeGraphs, biomaRt
Imports: data.table, RColorBrewer, MCMCpack, lmtest, methods
Published: 2018-07-30
Author: Marijke Van Moerbeke
Maintainer: Marijke Van Moerbeke <marijke.vanmoerbeke at>
License: GPL-3
NeedsCompilation: no
CRAN checks: REIDS results


Reference manual: REIDS.pdf
Vignettes: REIDSvignette
Package source: REIDS_0.1.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X binaries: r-release: not available, r-oldrel: REIDS_0.0.1.tgz
Old sources: REIDS archive


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