Creation of linkage maps in polyploid species from marker dosage scores of an F1 cross from two heterozygous parents. Currently works for autotriploid, autotetraploid and autohexaploid species, as well as segmental allotetraploids. Methods are described in a manuscript of Bourke et al. (2018) <doi:10.1093/bioinformatics/bty371>.
| Version: | 1.0.18 |
| Depends: | R (≥ 3.2.0) |
| Imports: | igraph, doParallel, foreach, knitr, combinat, MDSMap |
| Suggests: | rmarkdown, Hmisc, LPmerge, reshape2, RColorBrewer |
| Published: | 2018-11-01 |
| Author: | Peter Bourke [aut, cre], Geert van Geest [aut] |
| Maintainer: | Peter Bourke <pbourkey at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL] |
| NeedsCompilation: | no |
| CRAN checks: | polymapR results |
| Reference manual: | polymapR.pdf |
| Vignettes: |
How to use polymapR |
| Package source: | polymapR_1.0.18.tar.gz |
| Windows binaries: | r-devel: polymapR_1.0.18.zip, r-release: polymapR_1.0.18.zip, r-oldrel: polymapR_1.0.18.zip |
| OS X binaries: | r-release: polymapR_1.0.18.tgz, r-oldrel: polymapR_1.0.18.tgz |
| Old sources: | polymapR archive |
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