refGenome: Gene and Splice Site Annotation Using Annotation Data from Ensembl and UCSC Genome Browsers

Contains functionality for import and managing of downloaded genome annotation Data from Ensembl genome browser (European Bioinformatics Institute) and from UCSC genome browser (University of California, Santa Cruz) and annotation routines for genomic positions and splice site positions.

Depends: methods, doBy, RSQLite
Imports: DBI
Published: 2018-12-30
Author: Wolfgang Kaisers
Maintainer: ORPHANED
License: GPL-2
NeedsCompilation: yes
Materials: NEWS ChangeLog
CRAN checks: refGenome results


Reference manual: refGenome.pdf
Vignettes: Using refGenome package
The refGenome package
Package source: refGenome_1.7.3.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X binaries: r-release: refGenome_1.7.3.1.tgz, r-oldrel: refGenome_1.7.3.tgz
Old sources: refGenome archive

Reverse dependencies:

Reverse depends: rbamtools


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