CRAN Package Check Results for Package PCMBase

Last updated on 2019-03-14 00:46:49 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.7 11.71 116.70 128.41 ERROR
r-devel-linux-x86_64-debian-gcc 1.2.7 10.29 87.82 98.11 ERROR
r-devel-linux-x86_64-fedora-clang 1.2.7 148.98 ERROR
r-devel-linux-x86_64-fedora-gcc 1.2.7 136.94 ERROR
r-devel-windows-ix86+x86_64 1.2.7 22.00 118.00 140.00 ERROR
r-patched-linux-x86_64 1.2.7 9.37 103.43 112.80 OK
r-patched-solaris-x86 1.2.7 191.60 OK
r-release-linux-x86_64 OK
r-release-windows-ix86+x86_64 1.2.7 25.00 142.00 167.00 WARN
r-release-osx-x86_64 1.2.7 OK
r-oldrel-windows-ix86+x86_64 1.2.7 21.00 166.00 187.00 OK
r-oldrel-osx-x86_64 1.2.7 OK

Check Details

Version: 1.2.7
Check: tests
Result: ERROR
     Running 'testthat.R' [16s/13s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(PCMBase)
     >
     > test_check("PCMBase")
     -- 1. Failure: Tree with 40 tips and one regime (@test-PCMTree.R#25) ----------
     PCMTreeGetParent(tree.a, 71L) not identical to 52.
     1/1 mismatches
     [1] 70 - 52 == 18
    
     -- 2. Failure: Tree with 40 tips and two regimes (@test-PCMTree.R#38) ---------
     PCMTreeGetParent(tree.ab, 71L) not identical to 52.
     1/1 mismatches
     [1] 70 - 52 == 18
    
     -- 3. Failure: PCMTreeNodeTimes (@test-PCMTree.R#51) --------------------------
     PCMTreeNodeTimes(tree) not equivalent to c(...).
     28/29 mismatches (average diff: 0.695)
     [1] 2.07 - 0.667 == 1.4078
     [2] 2.69 - 1.036 == 1.6498
     [3] 2.38 - 1.477 == 0.9010
     [4] 2.08 - 1.619 == 0.4605
     [5] 1.95 - 2.107 == -0.1537
     [6] 2.57 - 3.574 == -1.0049
     [7] 2.28 - 3.261 == -0.9782
     [8] 2.89 - 3.563 == -0.6709
     [9] 2.66 - 2.595 == 0.0674
     ...
    
     -- 4. Error: (unknown) (@test-PCMTree.R#67) -----------------------------------
     ERR:02621:PCMBase:PCMTree.R:PCMTreeClade:28: cladeRootNode of character-type was not found in tree$node.label
     1: PCMTreeEvalNestedEDxOnTree("E(E(tree, 20),28)", tree) at testthat/test-PCMTree.R:67
     2: eval(parse(text = expr), envir = env)
     3: eval(parse(text = expr), envir = env)
     4: E(E(tree, 20), 28)
     5: PCMTreeExtractClade(tree = x, cladeRootNode = as.character(node), tableAncestors = tableAncestors)
     6: stop(paste0("ERR:02621:PCMBase:PCMTree.R:PCMTreeClade:", cladeRootNode, ": cladeRootNode of character-type was not found in tree$node.label"))
    
     == testthat results ===========================================================
     OK: 69 SKIPPED: 0 FAILED: 4
     1. Failure: Tree with 40 tips and one regime (@test-PCMTree.R#25)
     2. Failure: Tree with 40 tips and two regimes (@test-PCMTree.R#38)
     3. Failure: PCMTreeNodeTimes (@test-PCMTree.R#51)
     4. Error: (unknown) (@test-PCMTree.R#67)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.2.7
Check: tests
Result: ERROR
     Running ‘testthat.R’ [10s/13s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(PCMBase)
     >
     > test_check("PCMBase")
     ── 1. Failure: Tree with 40 tips and one regime (@test-PCMTree.R#25) ──────────
     PCMTreeGetParent(tree.a, 71L) not identical to 52.
     1/1 mismatches
     [1] 70 - 52 == 18
    
     ── 2. Failure: Tree with 40 tips and two regimes (@test-PCMTree.R#38) ─────────
     PCMTreeGetParent(tree.ab, 71L) not identical to 52.
     1/1 mismatches
     [1] 70 - 52 == 18
    
     ── 3. Failure: PCMTreeNodeTimes (@test-PCMTree.R#51) ──────────────────────────
     PCMTreeNodeTimes(tree) not equivalent to c(...).
     28/29 mismatches (average diff: 0.695)
     [1] 2.07 - 0.667 == 1.4078
     [2] 2.69 - 1.036 == 1.6498
     [3] 2.38 - 1.477 == 0.9010
     [4] 2.08 - 1.619 == 0.4605
     [5] 1.95 - 2.107 == -0.1537
     [6] 2.57 - 3.574 == -1.0049
     [7] 2.28 - 3.261 == -0.9782
     [8] 2.89 - 3.563 == -0.6709
     [9] 2.66 - 2.595 == 0.0674
     ...
    
     ── 4. Error: (unknown) (@test-PCMTree.R#67) ───────────────────────────────────
     ERR:02621:PCMBase:PCMTree.R:PCMTreeClade:28: cladeRootNode of character-type was not found in tree$node.label
     1: PCMTreeEvalNestedEDxOnTree("E(E(tree, 20),28)", tree) at testthat/test-PCMTree.R:67
     2: eval(parse(text = expr), envir = env)
     3: eval(parse(text = expr), envir = env)
     4: E(E(tree, 20), 28)
     5: PCMTreeExtractClade(tree = x, cladeRootNode = as.character(node), tableAncestors = tableAncestors)
     6: stop(paste0("ERR:02621:PCMBase:PCMTree.R:PCMTreeClade:", cladeRootNode, ": cladeRootNode of character-type was not found in tree$node.label"))
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 69 SKIPPED: 0 FAILED: 4
     1. Failure: Tree with 40 tips and one regime (@test-PCMTree.R#25)
     2. Failure: Tree with 40 tips and two regimes (@test-PCMTree.R#38)
     3. Failure: PCMTreeNodeTimes (@test-PCMTree.R#51)
     4. Error: (unknown) (@test-PCMTree.R#67)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.2.7
Check: tests
Result: ERROR
     Running ‘testthat.R’ [14s/14s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(PCMBase)
     >
     > test_check("PCMBase")
     OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
     OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
     ── 1. Failure: Tree with 40 tips and one regime (@test-PCMTree.R#25) ──────────
     PCMTreeGetParent(tree.a, 71L) not identical to 52.
     1/1 mismatches
     [1] 70 - 52 == 18
    
     ── 2. Failure: Tree with 40 tips and two regimes (@test-PCMTree.R#38) ─────────
     PCMTreeGetParent(tree.ab, 71L) not identical to 52.
     1/1 mismatches
     [1] 70 - 52 == 18
    
     ── 3. Failure: PCMTreeNodeTimes (@test-PCMTree.R#51) ──────────────────────────
     PCMTreeNodeTimes(tree) not equivalent to c(...).
     28/29 mismatches (average diff: 0.695)
     [1] 2.07 - 0.667 == 1.4078
     [2] 2.69 - 1.036 == 1.6498
     [3] 2.38 - 1.477 == 0.9010
     [4] 2.08 - 1.619 == 0.4605
     [5] 1.95 - 2.107 == -0.1537
     [6] 2.57 - 3.574 == -1.0049
     [7] 2.28 - 3.261 == -0.9782
     [8] 2.89 - 3.563 == -0.6709
     [9] 2.66 - 2.595 == 0.0674
     ...
    
     ── 4. Error: (unknown) (@test-PCMTree.R#67) ───────────────────────────────────
     ERR:02621:PCMBase:PCMTree.R:PCMTreeClade:28: cladeRootNode of character-type was not found in tree$node.label
     1: PCMTreeEvalNestedEDxOnTree("E(E(tree, 20),28)", tree) at testthat/test-PCMTree.R:67
     2: eval(parse(text = expr), envir = env)
     3: eval(parse(text = expr), envir = env)
     4: E(E(tree, 20), 28)
     5: PCMTreeExtractClade(tree = x, cladeRootNode = as.character(node), tableAncestors = tableAncestors)
     6: stop(paste0("ERR:02621:PCMBase:PCMTree.R:PCMTreeClade:", cladeRootNode, ": cladeRootNode of character-type was not found in tree$node.label"))
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 69 SKIPPED: 0 FAILED: 4
     1. Failure: Tree with 40 tips and one regime (@test-PCMTree.R#25)
     2. Failure: Tree with 40 tips and two regimes (@test-PCMTree.R#38)
     3. Failure: PCMTreeNodeTimes (@test-PCMTree.R#51)
     4. Error: (unknown) (@test-PCMTree.R#67)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.2.7
Check: tests
Result: ERROR
     Running ‘testthat.R’ [13s/14s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(PCMBase)
     >
     > test_check("PCMBase")
     ── 1. Failure: Tree with 40 tips and one regime (@test-PCMTree.R#25) ──────────
     PCMTreeGetParent(tree.a, 71L) not identical to 52.
     1/1 mismatches
     [1] 70 - 52 == 18
    
     ── 2. Failure: Tree with 40 tips and two regimes (@test-PCMTree.R#38) ─────────
     PCMTreeGetParent(tree.ab, 71L) not identical to 52.
     1/1 mismatches
     [1] 70 - 52 == 18
    
     ── 3. Failure: PCMTreeNodeTimes (@test-PCMTree.R#51) ──────────────────────────
     PCMTreeNodeTimes(tree) not equivalent to c(...).
     28/29 mismatches (average diff: 0.695)
     [1] 2.07 - 0.667 == 1.4078
     [2] 2.69 - 1.036 == 1.6498
     [3] 2.38 - 1.477 == 0.9010
     [4] 2.08 - 1.619 == 0.4605
     [5] 1.95 - 2.107 == -0.1537
     [6] 2.57 - 3.574 == -1.0049
     [7] 2.28 - 3.261 == -0.9782
     [8] 2.89 - 3.563 == -0.6709
     [9] 2.66 - 2.595 == 0.0674
     ...
    
     ── 4. Error: (unknown) (@test-PCMTree.R#67) ───────────────────────────────────
     ERR:02621:PCMBase:PCMTree.R:PCMTreeClade:28: cladeRootNode of character-type was not found in tree$node.label
     1: PCMTreeEvalNestedEDxOnTree("E(E(tree, 20),28)", tree) at testthat/test-PCMTree.R:67
     2: eval(parse(text = expr), envir = env)
     3: eval(parse(text = expr), envir = env)
     4: E(E(tree, 20), 28)
     5: PCMTreeExtractClade(tree = x, cladeRootNode = as.character(node), tableAncestors = tableAncestors)
     6: stop(paste0("ERR:02621:PCMBase:PCMTree.R:PCMTreeClade:", cladeRootNode, ": cladeRootNode of character-type was not found in tree$node.label"))
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 69 SKIPPED: 0 FAILED: 4
     1. Failure: Tree with 40 tips and one regime (@test-PCMTree.R#25)
     2. Failure: Tree with 40 tips and two regimes (@test-PCMTree.R#38)
     3. Failure: PCMTreeNodeTimes (@test-PCMTree.R#51)
     4. Error: (unknown) (@test-PCMTree.R#67)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.2.7
Check: tests
Result: ERROR
     Running 'testthat.R' [9s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(PCMBase)
     >
     > test_check("PCMBase")
     -- 1. Failure: Tree with 40 tips and one regime (@test-PCMTree.R#25) ----------
     PCMTreeGetParent(tree.a, 71L) not identical to 52.
     1/1 mismatches
     [1] 70 - 52 == 18
    
     -- 2. Failure: Tree with 40 tips and two regimes (@test-PCMTree.R#38) ---------
     PCMTreeGetParent(tree.ab, 71L) not identical to 52.
     1/1 mismatches
     [1] 70 - 52 == 18
    
     -- 3. Failure: PCMTreeNodeTimes (@test-PCMTree.R#51) --------------------------
     PCMTreeNodeTimes(tree) not equivalent to c(...).
     28/29 mismatches (average diff: 0.695)
     [1] 2.07 - 0.667 == 1.4078
     [2] 2.69 - 1.036 == 1.6498
     [3] 2.38 - 1.477 == 0.9010
     [4] 2.08 - 1.619 == 0.4605
     [5] 1.95 - 2.107 == -0.1537
     [6] 2.57 - 3.574 == -1.0049
     [7] 2.28 - 3.261 == -0.9782
     [8] 2.89 - 3.563 == -0.6709
     [9] 2.66 - 2.595 == 0.0674
     ...
    
     -- 4. Error: (unknown) (@test-PCMTree.R#67) -----------------------------------
     ERR:02621:PCMBase:PCMTree.R:PCMTreeClade:28: cladeRootNode of character-type was not found in tree$node.label
     1: PCMTreeEvalNestedEDxOnTree("E(E(tree, 20),28)", tree) at testthat/test-PCMTree.R:67
     2: eval(parse(text = expr), envir = env)
     3: eval(parse(text = expr), envir = env)
     4: E(E(tree, 20), 28)
     5: PCMTreeExtractClade(tree = x, cladeRootNode = as.character(node), tableAncestors = tableAncestors)
     6: stop(paste0("ERR:02621:PCMBase:PCMTree.R:PCMTreeClade:", cladeRootNode, ": cladeRootNode of character-type was not found in tree$node.label"))
    
     == testthat results ===========================================================
     OK: 69 SKIPPED: 0 FAILED: 4
     1. Failure: Tree with 40 tips and one regime (@test-PCMTree.R#25)
     2. Failure: Tree with 40 tips and two regimes (@test-PCMTree.R#38)
     3. Failure: PCMTreeNodeTimes (@test-PCMTree.R#51)
     4. Error: (unknown) (@test-PCMTree.R#67)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.2.7
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: S3 methods '[.fun_list', '[.grouped_df', 'all.equal.tbl_df', 'anti_join.data.frame', 'anti_join.tbl_df', 'arrange.data.frame', 'arrange.default', 'arrange.grouped_df', 'arrange.tbl_df', 'arrange_.data.frame', 'arrange_.tbl_df', 'as.data.frame.grouped_df', 'as.data.frame.rowwise_df', 'as.data.frame.tbl_cube', 'as.table.tbl_cube', 'as.tbl.data.frame', 'as.tbl.tbl', 'as.tbl_cube.array', 'as.tbl_cube.data.frame', 'as.tbl_cube.matrix', 'as.tbl_cube.table', 'as_tibble.grouped_df', 'as_tibble.tbl_cube', 'auto_copy.tbl_cube', 'auto_copy.tbl_df', 'cbind.grouped_df', 'collapse.data.frame', 'collect.data.frame', 'common_by.NULL', 'common_by.character', 'common_by.default', 'common_by.list', 'compute.data.frame', 'copy_to.DBIConnection', 'copy_to.src_local', 'default_missing.data.frame', 'default_missing.default', 'dim.tbl_cube', 'distinct.data.frame', 'distinct.default', 'distinct.grouped_df', 'distinct.tbl_df', 'distinct_.data.frame', 'distinct_.grouped_df', 'distinct_.tbl_df', 'do.NULL', 'do.da [... truncated]
Flavor: r-release-windows-ix86+x86_64