CRAN Package Check Results for Package anchors

Last updated on 2019-03-14 00:46:24 CET.

Check Details

Version: 3.0-8
Check: R code for possible problems
Result: NOTE
    .onAttach: no visible global function definition for
     'packageDescription'
    anchors: no visible binding for global variable 'na.omit'
    anchors.chopit.fit : chopit.llog: no visible global function definition
     for 'Rprof'
    anchors.chopit.fit: no visible global function definition for 'optim'
    anchors.combn: no visible global function definition for 'as.formula'
    anchors.combn: no visible global function definition for 'combn'
    anchors.data: no visible binding for global variable 'na.omit'
    anchors.data: no visible global function definition for 'as.formula'
    anchors.data: no visible global function definition for 'model.frame'
    anchors.data: no visible global function definition for 'model.matrix'
    anchors.data: no visible global function definition for
     'model.response'
    anchors.order: no visible binding for global variable 'na.omit'
    anchors.order.calc: no visible global function definition for 'runif'
    anchors.rank: no visible global function definition for 'as.formula'
    chopit: no visible binding for global variable 'na.omit'
    convert: no visible global function definition for 'na.omit'
    cpolr: no visible binding for global variable 'plogis'
    cpolr: no visible binding for global variable 'pnorm'
    cpolr: no visible binding for global variable 'dlogis'
    cpolr: no visible binding for global variable 'dnorm'
    cpolr: no visible global function definition for 'model.matrix'
    cpolr: no visible global function definition for 'model.weights'
    cpolr: no visible global function definition for 'model.offset'
    cpolr: no visible global function definition for 'model.response'
    cpolr: no visible global function definition for 'glm.fit'
    cpolr: no visible global function definition for 'binomial'
    cpolr: no visible global function definition for 'optim'
    cpolr: no visible global function definition for '.getXlevels'
    fitted.anchors.rank: no visible global function definition for 'fitted'
    gr.oprobit.self: no visible global function definition for 'pnorm'
    gr.oprobit.self: no visible global function definition for 'dnorm'
    gr.oprobit.vign: no visible global function definition for 'pnorm'
    gr.oprobit.vign: no visible global function definition for 'dnorm'
    ll.oprobit.unim: no visible global function definition for 'pnorm'
    ll.self.ai : f: no visible global function definition for 'dnorm'
    ll.self.ai: no visible global function definition for 'integrate'
    ll.self.ai.prob: no visible global function definition for 'pnorm'
    plot.anchors.combn: no visible global function definition for 'na.omit'
    summary.anchors.order: no visible global function definition for
     'xtabs'
    summary.anchors.rank: no visible global function definition for
     'fitted'
    vcov.cpolr: no visible binding for global variable 'flush.console'
    vcov.cpolr: no visible global function definition for 'update'
    Undefined global functions or variables:
     .getXlevels Rprof as.formula binomial combn dlogis dnorm fitted
     flush.console glm.fit integrate model.frame model.matrix model.offset
     model.response model.weights na.omit optim packageDescription plogis
     pnorm runif update xtabs
    Consider adding
     importFrom("stats", ".getXlevels", "as.formula", "binomial", "dlogis",
     "dnorm", "fitted", "glm.fit", "integrate", "model.frame",
     "model.matrix", "model.offset", "model.response",
     "model.weights", "na.omit", "optim", "plogis", "pnorm",
     "runif", "update", "xtabs")
     importFrom("utils", "Rprof", "combn", "flush.console",
     "packageDescription")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 3.0-8
Check: compiled code
Result: NOTE
    File ‘anchors/libs/anchors.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 3.0-8
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    (/usr/local/texlive/2016basic/texmf-dist/tex/latex/amsmath/amsgen.sty))
    (/usr/local/texlive/2016basic/texmf-dist/tex/latex/amsmath/amsbsy.sty)
    (/usr/local/texlive/2016basic/texmf-dist/tex/latex/amsmath/amsopn.sty))
    (/usr/local/texlive/2016basic/texmf-dist/tex/latex/amsfonts/umsa.fd)
    (/usr/local/texlive/2016basic/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
    (/usr/local/texlive/2016basic/texmf-dist/tex/latex/natbib/natbib.sty)
    (/usr/local/texlive/2016basic/texmf-dist/tex/latex/psnfss/times.sty)
    
    ! LaTeX Error: File `xy.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    Enter file name:
    ! Emergency stop.
    <read *>
    
    l.28 ^^M
    
    ! ==> Fatal error occurred, no output PDF file produced!
    Transcript written on anchors.log.
    make: *** [anchors.pdf] Error 1
    Error in buildVignettes(dir = "/Volumes/XT3/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/results/3.4/anchors.Rcheck/vign_test/anchors") :
     running 'make' failed
    Execution halted
Flavor: r-oldrel-osx-x86_64