Last updated on 2019-03-14 00:47:01 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.3 | 38.18 | 315.27 | 353.45 | WARN | |
| r-devel-linux-x86_64-debian-gcc | 1.1.3 | 30.90 | 248.64 | 279.54 | WARN | |
| r-devel-linux-x86_64-fedora-clang | 1.1.3 | 444.63 | WARN | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.3 | 422.32 | WARN | |||
| r-devel-windows-ix86+x86_64 | 1.1.3 | 72.00 | 528.00 | 600.00 | WARN | |
| r-patched-linux-x86_64 | 1.1.3 | 30.80 | 268.89 | 299.69 | OK | |
| r-patched-solaris-x86 | 1.1.3 | 468.40 | WARN | |||
| r-release-linux-x86_64 | OK | |||||
| r-release-windows-ix86+x86_64 | 1.1.3 | 88.00 | 340.00 | 428.00 | NOTE | |
| r-release-osx-x86_64 | 1.1.3 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 1.1.3 | 80.00 | 364.00 | 444.00 | NOTE | |
| r-oldrel-osx-x86_64 | 1.1.3 | WARN |
Version: 1.1.3
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building 'DengueVignette.Rmd' using rmarkdown
Loading required package: ape
Loading required package: ade4
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
/// adegenet 2.1.1 is loaded ////////////
> overview: '?adegenet'
> tutorials/doc/questions: 'adegenetWeb()'
> bug reports/feature requests: adegenetIssues()
Attaching package: 'adegenet'
The following object is masked from 'package:phangorn':
AICc
The following object is masked from 'package:treespace':
.render.server.info
Quitting from lines 250-252 (DengueVignette.Rmd)
Error: processing vignette 'DengueVignette.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building 'DengueVignette.Rmd'
--- re-building 'TransmissionTreesVignette.Rmd' using rmarkdown
Loading required package: ape
Loading required package: ade4
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
Attaching package: 'igraph'
The following objects are masked from 'package:ape':
edges, mst, ring
The following objects are masked from 'package:stats':
decompose, spectrum
The following object is masked from 'package:base':
union
--- finished re-building 'TransmissionTreesVignette.Rmd'
--- re-building 'introduction.Rmd' using rmarkdown
/// adegenet 2.1.1 is loaded ////////////
> overview: '?adegenet'
> tutorials/doc/questions: 'adegenetWeb()'
> bug reports/feature requests: adegenetIssues()
Attaching package: 'adegenet'
The following object is masked from 'package:treespace':
.render.server.info
Attaching package: 'adegraphics'
The following objects are masked from 'package:ade4':
kplotsepan.coa, s.arrow, s.class, s.corcircle, s.distri,
s.image, s.label, s.logo, s.match, s.traject, s.value,
table.value, triangle.class
The following object is masked from 'package:ape':
zoom
--- finished re-building 'introduction.Rmd'
--- re-building 'tipCategories.Rmd' using rmarkdown
Loading required package: ape
Loading required package: ade4
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
Loading required package: pander
--- finished re-building 'tipCategories.Rmd'
SUMMARY: processing the following file failed:
'DengueVignette.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.1.3
Check: installed package size
Result: NOTE
installed size is 6.5Mb
sub-directories of 1Mb or more:
doc 4.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.1.3
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘DengueVignette.Rmd’ using rmarkdown
Loading required package: ape
Loading required package: ade4
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
/// adegenet 2.1.1 is loaded ////////////
> overview: '?adegenet'
> tutorials/doc/questions: 'adegenetWeb()'
> bug reports/feature requests: adegenetIssues()
Attaching package: 'adegenet'
The following object is masked from 'package:phangorn':
AICc
The following object is masked from 'package:treespace':
.render.server.info
Quitting from lines 250-252 (DengueVignette.Rmd)
Error: processing vignette 'DengueVignette.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘DengueVignette.Rmd’
--- re-building ‘TransmissionTreesVignette.Rmd’ using rmarkdown
Loading required package: ape
Loading required package: ade4
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
Attaching package: 'igraph'
The following objects are masked from 'package:ape':
edges, mst, ring
The following objects are masked from 'package:stats':
decompose, spectrum
The following object is masked from 'package:base':
union
--- finished re-building ‘TransmissionTreesVignette.Rmd’
--- re-building ‘introduction.Rmd’ using rmarkdown
/// adegenet 2.1.1 is loaded ////////////
> overview: '?adegenet'
> tutorials/doc/questions: 'adegenetWeb()'
> bug reports/feature requests: adegenetIssues()
Attaching package: 'adegenet'
The following object is masked from 'package:treespace':
.render.server.info
Attaching package: 'adegraphics'
The following objects are masked from 'package:ade4':
kplotsepan.coa, s.arrow, s.class, s.corcircle, s.distri,
s.image, s.label, s.logo, s.match, s.traject, s.value,
table.value, triangle.class
The following object is masked from 'package:ape':
zoom
--- finished re-building ‘introduction.Rmd’
--- re-building ‘tipCategories.Rmd’ using rmarkdown
Loading required package: ape
Loading required package: ade4
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
Loading required package: pander
--- finished re-building ‘tipCategories.Rmd’
SUMMARY: processing the following file failed:
‘DengueVignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64
Version: 1.1.3
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: ape
Loading required package: ade4
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
/// adegenet 2.1.1 is loaded ////////////
> overview: '?adegenet'
> tutorials/doc/questions: 'adegenetWeb()'
> bug reports/feature requests: adegenetIssues()
Attaching package: 'adegenet'
The following object is masked from 'package:phangorn':
AICc
The following object is masked from 'package:treespace':
.render.server.info
Quitting from lines 136-138 (DengueVignette.Rmd)
Error: processing vignette 'DengueVignette.Rmd' failed with diagnostics:
cannot open the connection
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.1.3
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Loading required package: ade4
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
/// adegenet 2.1.1 is loaded ////////////
> overview: '?adegenet'
> tutorials/doc/questions: 'adegenetWeb()'
> bug reports/feature requests: adegenetIssues()
Attaching package: 'adegenet'
The following object is masked from 'package:phangorn':
AICc
The following object is masked from 'package:treespace':
.render.server.info
Quitting from lines 136-138 (DengueVignette.Rmd)
Error: processing vignette 'DengueVignette.Rmd' failed with diagnostics:
cannot open the connection
Execution halted
Flavor: r-release-osx-x86_64
Version: 1.1.3
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
Flavor: r-oldrel-osx-x86_64
Version: 1.1.3
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
/// adegenet 2.1.1 is loaded ////////////
> overview: '?adegenet'
> tutorials/doc/questions: 'adegenetWeb()'
> bug reports/feature requests: adegenetIssues()
Attaching package: 'adegenet'
The following object is masked from 'package:phangorn':
AICc
The following object is masked from 'package:treespace':
.render.server.info
Quitting from lines 136-138 (DengueVignette.Rmd)
Error: processing vignette 'DengueVignette.Rmd' failed with diagnostics:
cannot open the connection
Execution halted
Flavor: r-oldrel-osx-x86_64