nandb: Number and Brightness Image Analysis

Calculation of molecular number and brightness from fluorescence microscopy image series. The software was published in a 2016 paper <doi:10.1093/bioinformatics/btx434>. The seminal paper for the technique is Digman et al. 2008 <doi:10.1529/biophysj.107.114645>. A review of the technique was published in 2017 <doi:10.1016/j.ymeth.2017.12.001>.

Version: 2.0.0
Imports: Rcpp, filesstrings (≥ 3.0.0), magrittr, autothresholdr (≥ 1.3.0), dplyr, stringr, purrr, checkmate, detrendr (≥ 0.6.0), ijtiff (≥ 1.5.0), rlang, stats, MASS, reshape2, viridis, glue, BBmisc, ggplot2, assertthat, utils
LinkingTo: Rcpp
Suggests: knitr, rmarkdown, covr, testthat, abind, clipr, ore (≥ 1.4.0), styler, tidyr, mgcv, gridExtra, pacman, matrixStats, spelling
Published: 2018-11-11
Author: Rory Nolan ORCID iD [aut, cre, cph], Luis Alvarez ORCID iD [ctb, cph], Sergi Padilla-Parra ORCID iD [ctb, ths, cph]
Maintainer: Rory Nolan <rorynoolan at>
License: BSD_3_clause + file LICENSE
NeedsCompilation: yes
Language: en-US
Citation: nandb citation info
Materials: NEWS
CRAN checks: nandb results


Reference manual: nandb.pdf
Vignettes: Batch mode
Brightness timeseries
Calculating brightness with single images
Package source: nandb_2.0.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X binaries: r-release: nandb_2.0.0.tgz, r-oldrel: nandb_2.0.0.tgz
Old sources: nandb archive


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