CRAN Package Check Results for Package EHRtemporalVariability

Last updated on 2019-03-27 00:47:53 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 6.58 71.43 78.01 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 4.04 55.97 60.01 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 92.26 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 87.44 NOTE
r-devel-windows-ix86+x86_64 1.0 13.00 189.00 202.00 NOTE
r-patched-linux-x86_64 1.0 3.94 68.63 72.57 NOTE
r-patched-solaris-x86 1.0 92.20 WARN
r-release-linux-x86_64 1.0 3.79 69.38 73.17 NOTE
r-release-windows-ix86+x86_64 1.0 14.00 89.00 103.00 WARN
r-release-osx-x86_64 1.0 WARN
r-oldrel-windows-ix86+x86_64 1.0 9.00 73.00 82.00 WARN
r-oldrel-osx-x86_64 1.0 WARN

Check Details

Version: 1.0
Check: Rd line widths
Result: NOTE
    Rd file 'estimateDataTemporalMap-methods.Rd':
     \examples lines wider than 100 characters:
     inputFile <- "http://github.com/hms-dbmi/EHRtemporalVariability-DataExamples/raw/master/nhdsSubset.csv"
    
    Rd file 'estimateIGTProjection-methods.Rd':
     \examples lines wider than 100 characters:
     githubURL <- "https://github.com/hms-dbmi/EHRtemporalVariability-DataExamples/raw/master/variabilityDemoNHDS.RData"
    
    Rd file 'plotDataTemporalMap-methods.Rd':
     \examples lines wider than 100 characters:
     githubURL <- "https://github.com/hms-dbmi/EHRtemporalVariability-DataExamples/raw/master/variabilityDemoNHDS.RData"
    
    Rd file 'plotIGTProjection-methods.Rd':
     \examples lines wider than 100 characters:
     githubURL <- "https://github.com/hms-dbmi/EHRtemporalVariability-DataExamples/raw/master/variabilityDemoNHDS.RData"
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0
Check: installed package size
Result: NOTE
     installed size is 10.2Mb
     sub-directories of 1Mb or more:
     doc 4.9Mb
     extdata 5.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.0
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘devtools’ ‘shiny’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 2-30 (EHRtemporalVariability.Rmd)
    Error: processing vignette 'EHRtemporalVariability.Rmd' failed with diagnostics:
    could not find function "pkg_ver"
    Execution halted
Flavors: r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Quitting from lines 90-92 (EHRtemporalVariability.Rmd)
    Error: processing vignette 'EHRtemporalVariability.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavors: r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘BiocStyle’
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64