Last updated on 2019-03-27 00:47:50 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 2.37 | 70.39 | 72.76 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 1.97 | 55.74 | 57.71 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 86.94 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 91.09 | OK | |||
| r-devel-windows-ix86+x86_64 | 0.1.0 | 6.00 | 64.00 | 70.00 | ERROR | |
| r-patched-linux-x86_64 | 0.1.0 | 1.22 | 69.81 | 71.03 | NOTE | |
| r-patched-solaris-x86 | 0.1.0 | 128.90 | OK | |||
| r-release-linux-x86_64 | 0.1.0 | 1.54 | 70.64 | 72.18 | NOTE | |
| r-release-windows-ix86+x86_64 | 0.1.0 | 5.00 | 95.00 | 100.00 | OK | |
| r-release-osx-x86_64 | 0.1.0 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 0.1.0 | 3.00 | 75.00 | 78.00 | OK | |
| r-oldrel-osx-x86_64 | 0.1.0 | OK |
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in 'cytominer-Ex.R' failed
The error most likely occurred in:
> ### Name: replicate_correlation
> ### Title: Measure replicate correlation of variables.
> ### Aliases: replicate_correlation
>
> ### ** Examples
>
> set.seed(123)
> x1 <- rnorm(10)
> x2 <- x1 + rnorm(10) / 100
> y1 <- rnorm(10)
> y2 <- y1 + rnorm(10) / 10
> z1 <- rnorm(10)
> z2 <- z1 + rnorm(10) / 1
>
> batch <- rep(rep(1:2, each=5), 2)
>
> treatment <- rep(1:10, 2)
>
> replicate_id <- rep(1:2, each=10)
>
> sample <-
+ tibble::data_frame(x = c(x1, x2), y = c(y1, y2), z = c(z1, z2),
+ Metadata_treatment = treatment,
+ Metadata_replicate_id = replicate_id,
+ Metadata_batch = batch)
>
> head(sample)
# A tibble: 6 x 6
x y z Metadata_treatment Metadata_replicate_id Metadata_batch
<dbl> <dbl> <dbl> <int> <int> <int>
1 -0.560 -1.07 -0.695 1 1 1
2 -0.230 -0.218 -0.208 2 1 1
3 1.56 -1.03 -1.27 3 1 1
4 0.0705 -0.729 2.17 4 1 1
5 0.129 -0.625 1.21 5 1 1
6 1.72 -1.69 -1.12 6 1 2
>
> # `replicate_correlation`` returns the median, min, and max
> # replicate correlation (across batches) per variable
> replicate_correlation(sample = sample,
+ variables = c("x", "y", "z"),
+ strata = c("Metadata_treatment"),
+ replicates = 2,
+ split_by = "Metadata_batch",
+ replicate_by = "Metadata_replicate_id",
+ cores = 1)
# A tibble: 3 x 4
variable median min max
<chr> <dbl> <dbl> <dbl>
1 x 1.000 1.000 1.000
2 y 0.996 0.993 0.999
3 z 0.627 0.290 0.964
>
>
>
>
> cleanEx()
Error: connections left open:
<-CRANwin.fb05.statistik.uni-dortmund.de:11500 (sockconn)
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 0.1.0
Check: DESCRIPTION meta-information
Result: NOTE
Dependence on R version ‘3.3.3’ not with patchlevel 0
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64