CRAN Package Check Results for Package phenofit

Last updated on 2019-03-27 00:48:08 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.0 48.19 245.45 293.64 WARN
r-devel-linux-x86_64-debian-gcc 0.2.0 42.46 347.48 389.94 OK
r-devel-linux-x86_64-fedora-clang 0.2.0 373.89 NOTE
r-devel-linux-x86_64-fedora-gcc 0.2.0 347.39 NOTE
r-devel-windows-ix86+x86_64 0.2.0 106.00 456.00 562.00 OK
r-patched-linux-x86_64 0.2.0 44.33 275.40 319.73 OK
r-patched-solaris-x86 0.2.0 47.50 ERROR
r-release-linux-x86_64 0.2.0 40.51 284.55 325.06 OK
r-release-windows-ix86+x86_64 0.2.0 124.00 543.00 667.00 OK
r-release-osx-x86_64 0.2.0 NOTE
r-oldrel-windows-ix86+x86_64 0.2.0 97.00 459.00 556.00 ERROR
r-oldrel-osx-x86_64 0.2.0 ERROR

Check Details

Version: 0.2.0
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: unable to re-encode 'backval.R' lines 21, 26
     Warning: unable to re-encode 'curvefits.R' line 188
     Warning: unable to re-encode 'smooth_wWHIT.R' line 63
     Warning: unable to re-encode 'smooth_wWHIT_lambda.R' lines 168, 199
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.2.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘DT’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.2.0
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-patched-solaris-x86

Version: 0.2.0
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'testthat.R' [107s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(phenofit)
     >
     > test_check("phenofit")
     List of 5
     $ AG :Classes 'tbl_df', 'tbl' and 'data.frame': 18 obs. of 8 variables:
     $ Beck :Classes 'tbl_df', 'tbl' and 'data.frame': 18 obs. of 7 variables:
     $ Elmore:Classes 'tbl_df', 'tbl' and 'data.frame': 18 obs. of 8 variables:
     $ Gu :Classes 'tbl_df', 'tbl' and 'data.frame': 18 obs. of 10 variables:
     $ Zhang :Classes 'tbl_df', 'tbl' and 'data.frame': 18 obs. of 8 variables:
     NULL
     # A tibble: 18 x 8
     flag t0 mn mx rsp a3 rau a5
     <fct> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
     1 2000_1 145. 0.305 0.638 0.0498 6 0.00589 4.42
     2 2001_1 546. 0.283 0.649 0.0152 2 0.00769 2
     3 2002_1 882. 0.284 0.624 0.0208 2 0.00673 2.42
     4 2003_1 1235. 0.305 0.580 0.0246 2 0.00634 4.03
     5 2004_1 1721. 0.206 0.569 0.00419 2.35 0.0166 2.08
     6 2005_1 2039. 0.209 0.604 0.00740 2.10 0.00805 2
     7 2006_1 2427. 0.269 0.604 0.00556 4.69 0.0150 2
     8 2007_1 2680. 0.223 0.577 0.0442 6 0.00466 4.67
     9 2008_1 3149. 0.256 0.568 0.00817 4.63 0.0113 2
     10 2009_1 3524. 0.306 0.625 0.00714 5.50 0.0153 3.72
     11 2010_1 3870. 0.246 0.633 0.00733 2 0.00814 2
     12 2011_1 4168. 0.248 0.622 0.0195 2.95 0.00605 2.52
     13 2012_1 4633. 0.298 0.635 0.00660 6 0.0139 2
     14 2013_1 4879. 0.366 0.593 0.0472 6 0.00552 5.51
     15 2014_1 5350. 0.376 0.596 0.00726 2 0.0164 2
     16 2015_1 5727. 0.244 0.604 0.00302 2 0.00979 2
     17 2016_1 5964. 0.336 0.569 0.0488 2.10 0.00533 5.16
     18 2017_1 6384. 0.158 0.550 0.00492 2 0.00565 3.92
     -- 1. Failure: (unknown) (@test-PhenoExtract.R#47) ----------------------------
     `{ ... }` produced warnings.
    
     -- 2. Failure: (unknown) (@test-PhenoExtract.R#54) ----------------------------
     `{ ... }` produced warnings.
    
     -- 3. Failure: (unknown) (@test-PhenoExtract.R#61) ----------------------------
     `{ ... }` produced warnings.
    
     meth RMSE NSE R pvalue n
     1 AG 9.940385e-03 0.9985845 0.9993452 4.489947e-65 46
     2 Beck 3.601820e-12 1.0000000 1.0000000 0.000000e+00 46
     3 Elmore 5.158407e-10 1.0000000 1.0000000 0.000000e+00 46
     4 Gu 2.687979e-12 1.0000000 1.0000000 0.000000e+00 46
     5 Klos NA NA NA NA 0
     6 Zhang 5.529263e-06 1.0000000 1.0000000 8.059650e-208 46
     ucminf failed for this problem
     nlminb function evaluation failure
     optim function evaluation failure
     == testthat results ===========================================================
     OK: 39 SKIPPED: 0 FAILED: 3
     1. Failure: (unknown) (@test-PhenoExtract.R#47)
     2. Failure: (unknown) (@test-PhenoExtract.R#54)
     3. Failure: (unknown) (@test-PhenoExtract.R#61)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.2.0
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'testthat.R' [135s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(phenofit)
     >
     > test_check("phenofit")
     List of 5
     $ AG :Classes 'tbl_df', 'tbl' and 'data.frame': 18 obs. of 8 variables:
     $ Beck :Classes 'tbl_df', 'tbl' and 'data.frame': 18 obs. of 7 variables:
     $ Elmore:Classes 'tbl_df', 'tbl' and 'data.frame': 18 obs. of 8 variables:
     $ Gu :Classes 'tbl_df', 'tbl' and 'data.frame': 18 obs. of 10 variables:
     $ Zhang :Classes 'tbl_df', 'tbl' and 'data.frame': 18 obs. of 8 variables:
     NULL
     # A tibble: 18 x 8
     flag t0 mn mx rsp a3 rau a5
     <fct> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
     1 2000_1 145. 0.305 0.638 0.0498 6 0.00589 4.42
     2 2001_1 546. 0.283 0.649 0.0152 2 0.00769 2
     3 2002_1 882. 0.284 0.624 0.0208 2 0.00673 2.42
     4 2003_1 1235. 0.305 0.580 0.0246 2 0.00634 4.03
     5 2004_1 1721. 0.206 0.569 0.00419 2.35 0.0166 2.08
     6 2005_1 2039. 0.209 0.604 0.00740 2.10 0.00805 2
     7 2006_1 2427. 0.269 0.604 0.00556 4.69 0.0150 2
     8 2007_1 2680. 0.223 0.577 0.0442 6 0.00466 4.67
     9 2008_1 3149. 0.256 0.568 0.00817 4.63 0.0113 2
     10 2009_1 3524. 0.306 0.625 0.00714 5.50 0.0153 3.72
     11 2010_1 3870. 0.246 0.633 0.00733 2 0.00814 2
     12 2011_1 4168. 0.248 0.622 0.0195 2.95 0.00605 2.52
     13 2012_1 4633. 0.298 0.635 0.00660 6 0.0139 2
     14 2013_1 4879. 0.366 0.593 0.0472 6 0.00552 5.51
     15 2014_1 5350. 0.376 0.596 0.00726 2 0.0164 2
     16 2015_1 5727. 0.244 0.604 0.00302 2 0.00979 2
     17 2016_1 5964. 0.336 0.569 0.0488 2.10 0.00533 5.16
     18 2017_1 6331. 0.185 0.542 0.00727 2 0.00445 6.00
     -- 1. Failure: (unknown) (@test-PhenoExtract.R#47) ----------------------------
     `{ ... }` produced warnings.
    
     -- 2. Failure: (unknown) (@test-PhenoExtract.R#54) ----------------------------
     `{ ... }` produced warnings.
    
     -- 3. Failure: (unknown) (@test-PhenoExtract.R#61) ----------------------------
     `{ ... }` produced warnings.
    
     meth RMSE NSE R pvalue n
     1 AG 9.940385e-03 0.9985845 0.9993452 4.489947e-65 46
     2 Beck 7.389751e-13 1.0000000 1.0000000 0.000000e+00 46
     3 Elmore 2.225405e-11 1.0000000 1.0000000 0.000000e+00 46
     4 Gu 6.894880e-12 1.0000000 1.0000000 0.000000e+00 46
     5 Klos NA NA NA NA 0
     6 Zhang 5.528884e-06 1.0000000 1.0000000 8.037640e-208 46
     ucminf failed for this problem
     nlminb function evaluation failure
     optim function evaluation failure
     == testthat results ===========================================================
     OK: 39 SKIPPED: 0 FAILED: 3
     1. Failure: (unknown) (@test-PhenoExtract.R#47)
     2. Failure: (unknown) (@test-PhenoExtract.R#54)
     3. Failure: (unknown) (@test-PhenoExtract.R#61)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.2.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [135s/92s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     0.690218425754783, 0.678657252906432, 0.654485076921259, 0.607320834180291, 0.52656969853323, 0.414987511120608, 0.299087336084977, 0.209455314007871, 0.154673776484924, 0.12586435290894, 0.111904183415413, 0.105407979180461, 0.102442082624484, 0.101099763363225, 0.100494654810819, 0.100222363683917, 0.10009993483866, 0.100044907736414, 0.100020179178382, 0.100009067257246))
     Error in func(x, ...) :
     unused arguments (.id = NULL, y = c(0.10443492479736, 0.109781499602369, 0.121342713517969, 0.145514907911232, 0.192679158824198, 0.273430297922196, 0.385012486393631, 0.500912660810508, 0.590544680173717, 0.645326211056093, 0.674135619583317, 0.688095755463937, 0.694591884837514, 0.697557614762017, 0.698899563167441, 0.69950384636171, 0.699774300626224, 0.699892641498429, 0.699938570848825, 0.699943052977807, 0.699909110546488, 0.699813857566764, 0.699593119691871, 0.699098468071634, 0.697998746008804, 0.695564909118357,
     0.690218425754783, 0.678657252906432, 0.654485076921259, 0.607320834180291, 0.52656969853323, 0.414987511120608, 0.299087336084977, 0.209455314007871, 0.154673776484924, 0.12586435290894, 0.111904183415413, 0.105407979180461, 0.102442082624484, 0.101099763363225, 0.100494654810819, 0.100222363683917, 0.10009993483866, 0.100044907736414, 0.100020179178382, 0.100009067257246))
     Error in func(x, ...) :
     unused arguments (.id = NULL, y = c(0.10443492479736, 0.109781499602369, 0.121342713517969, 0.145514907911232, 0.192679158824198, 0.273430297922196, 0.385012486393631, 0.500912660810508, 0.590544680173717, 0.645326211056093, 0.674135619583317, 0.688095755463937, 0.694591884837514, 0.697557614762017, 0.698899563167441, 0.69950384636171, 0.699774300626224, 0.699892641498429, 0.699938570848825, 0.699943052977807, 0.699909110546488, 0.699813857566764, 0.699593119691871, 0.699098468071634, 0.697998746008804, 0.695564909118357,
     0.690218425754783, 0.678657252906432, 0.654485076921259, 0.607320834180291, 0.52656969853323, 0.414987511120608, 0.299087336084977, 0.209455314007871, 0.154673776484924, 0.12586435290894, 0.111904183415413, 0.105407979180461, 0.102442082624484, 0.101099763363225, 0.100494654810819, 0.100222363683917, 0.10009993483866, 0.100044907736414, 0.100020179178382, 0.100009067257246))
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 39 SKIPPED: 0 FAILED: 3
     1. Failure: (unknown) (@test-PhenoExtract.R#47)
     2. Failure: (unknown) (@test-PhenoExtract.R#54)
     3. Failure: (unknown) (@test-PhenoExtract.R#61)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-osx-x86_64