CRAN Package Check Results for Package psycho

Last updated on 2019-03-27 00:48:10 CET.

Check Details

Version: 0.4.0
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: unable to re-encode 'analyze.stanreg.R' line 19
     Warning: unable to re-encode 'assess.R' line 29
     Warning: unable to re-encode 'crawford.test.R' line 22
     Warning: unable to re-encode 'crawford_dissociation.test.R' line 1
     Warning: unable to re-encode 'formatting.R' line 65
     Warning: unable to re-encode 'get_R2.R' line 276
     Warning: unable to re-encode 'interpret_odds.R' line 19
     Warning: unable to re-encode 'mpe.R' line 3
     Warning: replacing previous import 'loo::kfold' by 'rstanarm::kfold' when loading 'psycho'
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.4.0
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: replacing previous import ‘loo::kfold’ by ‘rstanarm::kfold’ when loading ‘psycho’
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.4.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘methods’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64

Version: 0.4.0
Flags: --no-vignettes
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: replacing previous import 'loo::kfold' by 'rstanarm::kfold' when loading 'psycho'
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 0.4.0
Check: installed package size
Result: NOTE
     installed size is 5.3Mb
     sub-directories of 1Mb or more:
     doc 4.4Mb
Flavor: r-patched-solaris-x86

Version: 0.4.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: Rcpp
    rstanarm (Version 2.18.2, packaged: 2018-11-08 22:19:38 UTC)
    - Do not expect the default priors to remain the same in future rstanarm versions.
    Thus, R scripts should specify priors explicitly, even if they are just the defaults.
    - For execution on a local, multicore CPU with excess RAM we recommend calling
    options(mc.cores = parallel::detectCores())
    - Plotting theme set to bayesplot::theme_default().
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Warning: replacing previous import 'loo::kfold' by 'rstanarm::kfold' when loading 'psycho'
    Warning in R2_LOO_Adjusted(fit) :
     Something went wrong in the Loo-adjusted R2 computation.
    Warning: There were 9 divergent transitions after warmup. Increasing adapt_delta above 0.95 may help. See
    http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
    Warning: Examine the pairs() plot to diagnose sampling problems
    
    Warning: Markov chains did not converge! Do not analyze results!
    
    Attaching package: 'plotly'
    
    The following object is masked from 'package:ggplot2':
    
     last_plot
    
    The following object is masked from 'package:stats':
    
     filter
    
    The following object is masked from 'package:graphics':
    
     layout
    
    Quitting from lines 506-534 (bayesian.Rmd)
    Error: processing vignette 'bayesian.Rmd' failed with diagnostics:
    there is no package called 'webshot'
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.4.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    The following object is masked from 'package:ggplot2':
    
     last_plot
    
    The following objects are masked from 'package:rstanarm':
    
     get_x, get_y
    
    The following object is masked from 'package:stats':
    
     filter
    
    The following object is masked from 'package:graphics':
    
     layout
    
    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Warning in normalizePath(f2) :
     path[1]="./webshotdc086150611d.png": No such file or directory
    Warning in file(con, "rb") :
     cannot open file './webshotdc086150611d.png': No such file or directory
    Quitting from lines 506-534 (bayesian.Rmd)
    Error: processing vignette 'bayesian.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.3.6
Flags: --no-vignettes
Check: R code for possible problems
Result: NOTE
    simulate_data_regression: possible error in diag(x = 1, nrow = n_var +
     1, ncol = n_var + 1, names = TRUE): unused argument (names = TRUE)
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.3.6
Flags: --no-vignettes
Check: for unstated dependencies in examples
Result: WARN
    Warning in parse(file = files, n = -1L) :
     invalid input found on input connection 'psycho-Ex.R'
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.3.6
Flags: --no-vignettes
Check: examples
Result: ERROR
    Running examples in 'psycho-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: simulate_data_regression
    > ### Title: Simulates data for single or multiple regression.
    > ### Aliases: simulate_data_regression
    >
    > ### ** Examples
    >
    > library(psycho)
    >
    > data <- simulate_data_regression(coefs=c(0.1, 0.8), sample=50, error=0)
    Error in diag(x = 1, nrow = n_var + 1, ncol = n_var + 1, names = TRUE) :
     unused argument (names = TRUE)
    Calls: simulate_data_regression
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.4.0
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-oldrel-osx-x86_64