BIGDAWG: Case-Control Analysis of Multi-Allelic Loci

Data sets and functions for chi-squared Hardy-Weinberg and case-control association tests of highly polymorphic genetic data [e.g., human leukocyte antigen (HLA) data]. Performs association tests at multiple levels of polymorphism (haplotype, locus and HLA amino-acids) as described in Pappas DJ, Marin W, Hollenbach JA, Mack SJ (2016) <doi:10.1016/j.humimm.2015.12.006>. Combines rare variants to a common class to account for sparse cells in tables as described by Hollenbach JA, Mack SJ, Thomson G, Gourraud PA (2012) <doi:10.1007/978-1-61779-842-9_14>.

Version: 2.1
Depends: R (≥ 3.3.0)
Imports: XML, httr, haplo.stats, parallel, knitr, rmarkdown
Published: 2018-02-08
Author: Derek Pappas, Steve Mack, Jill Hollenbach
Maintainer: Steve Mack <sjmack at>
License: GPL (≥ 3)
NeedsCompilation: no
Materials: NEWS
CRAN checks: BIGDAWG results


Reference manual: BIGDAWG.pdf
Vignettes: BIGDAWG
Package source: BIGDAWG_2.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X binaries: r-release: BIGDAWG_2.1.tgz, r-oldrel: BIGDAWG_2.1.tgz
Old sources: BIGDAWG archive


Please use the canonical form to link to this page.