landsepi: Landscape Epidemiology and Evolution

A spatio-temporal stochastic model to assess resistance deployment strategies against plant pathogens. The model is based on stochastic geometry for describing the landscape and the resistant hosts, a dispersal kernel for the dissemination of the pathogen, and a SEIR (Susceptible-Exposed-Infectious-Removed) architecture to simulate plant response to disease. Loup Rimbaud, Julien Papaïx, Jean-François Rey, Luke G Barrett, Peter H Thrall (2018) <doi:10.1371/journal.pcbi.1006067>.

Version: 0.0.7
Depends: methods, utils, grDevices (≥ 3.0.0), graphics (≥ 3.0.0), R (≥ 3.3.0), Rcpp (≥ 0.9.0), rgdal (≥ 1.2-16)
Imports: sp (≥ 1.0-17), stats (≥ 3.0.2), Matrix, MASS, rgeos, maptools, fields, splancs, sf
LinkingTo: Rcpp
Published: 2019-01-14
Author: Loup Rimbaud [aut], Julien Papaix [aut], Jean-Francois Rey [cre]
Maintainer: Jean-Francois Rey <jean-francois.rey at>
License: GPL-2 | GPL-3 | file LICENSE [expanded from: GPL (≥ 2) | file LICENSE]
NeedsCompilation: yes
SystemRequirements: C++11, gsl, gdal >= 1.11.0
Citation: landsepi citation info
CRAN checks: landsepi results


Reference manual: landsepi.pdf
Package source: landsepi_0.0.7.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X binaries: r-release: landsepi_0.0.7.tgz, r-oldrel: landsepi_0.0.7.tgz
Old sources: landsepi archive


Please use the canonical form to link to this page.