CRAN Package Check Results for Package nLTT

Last updated on 2019-04-13 01:58:12 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.4 2.59 292.86 295.45 ERROR
r-devel-linux-x86_64-debian-gcc 1.4 1.90 211.41 213.31 ERROR
r-devel-linux-x86_64-fedora-clang 1.4 354.84 ERROR
r-devel-linux-x86_64-fedora-gcc 1.4 341.05 ERROR
r-devel-windows-ix86+x86_64 1.4 9.00 265.00 274.00 ERROR
r-patched-linux-x86_64 1.4 2.49 296.15 298.64 ERROR
r-patched-solaris-x86 1.4 422.20 ERROR
r-release-linux-x86_64 1.4 1.92 280.12 282.04 OK
r-release-windows-ix86+x86_64 1.4 5.00 363.00 368.00 OK
r-release-osx-x86_64 1.4 WARN
r-oldrel-windows-ix86+x86_64 1.4 4.00 298.00 302.00 OK
r-oldrel-osx-x86_64 1.4 WARN

Check Details

Version: 1.4
Check: tests
Result: ERROR
     Running 'testthat.R' [124s/133s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(nLTT) # nolint keep package name non-all-lowercase, due to backwards compatibility
     >
     > test_check("nLTT")
     [1] "/home/hornik"
    
     Generating Particles for iteration 1
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 2
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 3
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 4
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 5
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 6
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 7
     0--------25--------50--------75--------100
     *[1] "/home/hornik"
    
     Generating Chain
     0--------25--------50--------75--------100
     *********************************************
     Finished MCMC.
    
     Generating Chain
     0--------25--------50--------75--------100
     *********************************************
     Finished MCMC.
    
     Generating Chain
     0--------25--------50--------75--------100
     *********************************************
     Finished MCMC.
    
     Generating Chain
     0--------25--------50--------75--------100
     *-- 1. Failure: abs nLTTstat on known tree (@test-nLTTstat.R#27) ---------------
     0.1380347 not equal to nLTTstat(tree1 = p, tree2 = q, distance_method = "abs").
     1/1 mismatches
     [1] 0.138 - 0.105 == 0.0333
    
     -- 2. Failure: squ nLTTstat on known tree (@test-nLTTstat.R#39) ---------------
     0.02407742 not equal to nLTTstat(tree1 = p, tree2 = q, distance_method = "squ").
     1/1 mismatches
     [1] 0.0241 - 0.0165 == 0.00753
    
     -- 3. Failure: nLTTstat_exact use (@test-nLTTstat_exact.R#18) -----------------
     0.1108467 not equal to nLTTstat_exact(tree1 = p, tree2 = q, distance_method = "abs").
     1/1 mismatches
     [1] 0.111 - 0.063 == 0.0478
    
     == testthat results ===========================================================
     OK: 177 SKIPPED: 1 FAILED: 3
     1. Failure: abs nLTTstat on known tree (@test-nLTTstat.R#27)
     2. Failure: squ nLTTstat on known tree (@test-nLTTstat.R#39)
     3. Failure: nLTTstat_exact use (@test-nLTTstat_exact.R#18)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.4
Check: tests
Result: ERROR
     Running ‘testthat.R’ [89s/127s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(nLTT) # nolint keep package name non-all-lowercase, due to backwards compatibility
     >
     > test_check("nLTT")
     [1] "/home/hornik"
    
     Generating Particles for iteration 1
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 2
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 3
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 4
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 5
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 6
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 7
     0--------25--------50--------75--------100
     *[1] "/home/hornik"
    
     Generating Chain
     0--------25--------50--------75--------100
     *********************************************
     Finished MCMC.
    
     Generating Chain
     0--------25--------50--------75--------100
     *********************************************
     Finished MCMC.
    
     Generating Chain
     0--------25--------50--------75--------100
     *********************************************
     Finished MCMC.
    
     Generating Chain
     0--------25--------50--------75--------100
     *── 1. Failure: abs nLTTstat on known tree (@test-nLTTstat.R#27) ───────────────
     0.1380347 not equal to nLTTstat(tree1 = p, tree2 = q, distance_method = "abs").
     1/1 mismatches
     [1] 0.138 - 0.105 == 0.0333
    
     ── 2. Failure: squ nLTTstat on known tree (@test-nLTTstat.R#39) ───────────────
     0.02407742 not equal to nLTTstat(tree1 = p, tree2 = q, distance_method = "squ").
     1/1 mismatches
     [1] 0.0241 - 0.0165 == 0.00753
    
     ── 3. Failure: nLTTstat_exact use (@test-nLTTstat_exact.R#18) ─────────────────
     0.1108467 not equal to nLTTstat_exact(tree1 = p, tree2 = q, distance_method = "abs").
     1/1 mismatches
     [1] 0.111 - 0.063 == 0.0478
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 177 SKIPPED: 1 FAILED: 3
     1. Failure: abs nLTTstat on known tree (@test-nLTTstat.R#27)
     2. Failure: squ nLTTstat on known tree (@test-nLTTstat.R#39)
     3. Failure: nLTTstat_exact use (@test-nLTTstat_exact.R#18)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.4
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘deSolve’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.4
Check: tests
Result: ERROR
     Running ‘testthat.R’ [150s/336s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(nLTT) # nolint keep package name non-all-lowercase, due to backwards compatibility
     >
     > test_check("nLTT")
     [1] "/data/gannet/ripley"
    
     Generating Particles for iteration 1
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 2
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 3
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 4
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 5
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 6
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 7
     0--------25--------50--------75--------100
     *[1] "/data/gannet/ripley"
    
     Generating Chain
     0--------25--------50--------75--------100
     *********************************************
     Finished MCMC.
    
     Generating Chain
     0--------25--------50--------75--------100
     *********************************************
     Finished MCMC.
    
     Generating Chain
     0--------25--------50--------75--------100
     *********************************************
     Finished MCMC.
    
     Generating Chain
     0--------25--------50--------75--------100
     *── 1. Failure: abs nLTTstat on known tree (@test-nLTTstat.R#27) ───────────────
     0.1380347 not equal to nLTTstat(tree1 = p, tree2 = q, distance_method = "abs").
     1/1 mismatches
     [1] 0.138 - 0.105 == 0.0333
    
     ── 2. Failure: squ nLTTstat on known tree (@test-nLTTstat.R#39) ───────────────
     0.02407742 not equal to nLTTstat(tree1 = p, tree2 = q, distance_method = "squ").
     1/1 mismatches
     [1] 0.0241 - 0.0165 == 0.00753
    
     ── 3. Failure: nLTTstat_exact use (@test-nLTTstat_exact.R#18) ─────────────────
     0.1108467 not equal to nLTTstat_exact(tree1 = p, tree2 = q, distance_method = "abs").
     1/1 mismatches
     [1] 0.111 - 0.063 == 0.0478
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 177 SKIPPED: 1 FAILED: 3
     1. Failure: abs nLTTstat on known tree (@test-nLTTstat.R#27)
     2. Failure: squ nLTTstat on known tree (@test-nLTTstat.R#39)
     3. Failure: nLTTstat_exact use (@test-nLTTstat_exact.R#18)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.4
Check: tests
Result: ERROR
     Running ‘testthat.R’ [142s/335s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(nLTT) # nolint keep package name non-all-lowercase, due to backwards compatibility
     >
     > test_check("nLTT")
     [1] "/data/gannet/ripley"
    
     Generating Particles for iteration 1
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 2
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 3
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 4
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 5
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 6
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 7
     0--------25--------50--------75--------100
     *[1] "/data/gannet/ripley"
    
     Generating Chain
     0--------25--------50--------75--------100
     *********************************************
     Finished MCMC.
    
     Generating Chain
     0--------25--------50--------75--------100
     *********************************************
     Finished MCMC.
    
     Generating Chain
     0--------25--------50--------75--------100
     *********************************************
     Finished MCMC.
    
     Generating Chain
     0--------25--------50--------75--------100
     *── 1. Failure: abs nLTTstat on known tree (@test-nLTTstat.R#27) ───────────────
     0.1380347 not equal to nLTTstat(tree1 = p, tree2 = q, distance_method = "abs").
     1/1 mismatches
     [1] 0.138 - 0.105 == 0.0333
    
     ── 2. Failure: squ nLTTstat on known tree (@test-nLTTstat.R#39) ───────────────
     0.02407742 not equal to nLTTstat(tree1 = p, tree2 = q, distance_method = "squ").
     1/1 mismatches
     [1] 0.0241 - 0.0165 == 0.00753
    
     ── 3. Failure: nLTTstat_exact use (@test-nLTTstat_exact.R#18) ─────────────────
     0.1108467 not equal to nLTTstat_exact(tree1 = p, tree2 = q, distance_method = "abs").
     1/1 mismatches
     [1] 0.111 - 0.063 == 0.0478
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 177 SKIPPED: 1 FAILED: 3
     1. Failure: abs nLTTstat on known tree (@test-nLTTstat.R#27)
     2. Failure: squ nLTTstat on known tree (@test-nLTTstat.R#39)
     3. Failure: nLTTstat_exact use (@test-nLTTstat_exact.R#18)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.4
Check: tests
Result: ERROR
     Running 'testthat.R' [109s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(nLTT) # nolint keep package name non-all-lowercase, due to backwards compatibility
     >
     > test_check("nLTT")
     [1] "C:\\Users\\CRAN\\Documents"
    
     Generating Particles for iteration 1
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 2
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 3
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 4
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 5
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 6
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 7
     0--------25--------50--------75--------100
     *[1] "C:\\Users\\CRAN\\Documents"
    
     Generating Chain
     0--------25--------50--------75--------100
     *********************************************
     Finished MCMC.
    
     Generating Chain
     0--------25--------50--------75--------100
     *********************************************
     Finished MCMC.
    
     Generating Chain
     0--------25--------50--------75--------100
     *********************************************
     Finished MCMC.
    
     Generating Chain
     0--------25--------50--------75--------100
     *-- 1. Failure: abs nLTTstat on known tree (@test-nLTTstat.R#27) ---------------
     0.1380347 not equal to nLTTstat(tree1 = p, tree2 = q, distance_method = "abs").
     1/1 mismatches
     [1] 0.138 - 0.105 == 0.0333
    
     -- 2. Failure: squ nLTTstat on known tree (@test-nLTTstat.R#39) ---------------
     0.02407742 not equal to nLTTstat(tree1 = p, tree2 = q, distance_method = "squ").
     1/1 mismatches
     [1] 0.0241 - 0.0165 == 0.00753
    
     -- 3. Failure: nLTTstat_exact use (@test-nLTTstat_exact.R#18) -----------------
     0.1108467 not equal to nLTTstat_exact(tree1 = p, tree2 = q, distance_method = "abs").
     1/1 mismatches
     [1] 0.111 - 0.063 == 0.0478
    
     == testthat results ===========================================================
     OK: 177 SKIPPED: 1 FAILED: 3
     1. Failure: abs nLTTstat on known tree (@test-nLTTstat.R#27)
     2. Failure: squ nLTTstat on known tree (@test-nLTTstat.R#39)
     3. Failure: nLTTstat_exact use (@test-nLTTstat_exact.R#18)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.4
Check: tests
Result: ERROR
     Running ‘testthat.R’ [126s/133s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(nLTT) # nolint keep package name non-all-lowercase, due to backwards compatibility
     >
     > test_check("nLTT")
     [1] "/home/hornik"
    
     Generating Particles for iteration 1
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 2
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 3
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 4
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 5
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 6
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 7
     0--------25--------50--------75--------100
     *[1] "/home/hornik"
    
     Generating Chain
     0--------25--------50--------75--------100
     *********************************************
     Finished MCMC.
    
     Generating Chain
     0--------25--------50--------75--------100
     *********************************************
     Finished MCMC.
    
     Generating Chain
     0--------25--------50--------75--------100
     *********************************************
     Finished MCMC.
    
     Generating Chain
     0--------25--------50--------75--------100
     *── 1. Failure: abs nLTTstat on known tree (@test-nLTTstat.R#27) ───────────────
     0.1380347 not equal to nLTTstat(tree1 = p, tree2 = q, distance_method = "abs").
     1/1 mismatches
     [1] 0.138 - 0.105 == 0.0333
    
     ── 2. Failure: squ nLTTstat on known tree (@test-nLTTstat.R#39) ───────────────
     0.02407742 not equal to nLTTstat(tree1 = p, tree2 = q, distance_method = "squ").
     1/1 mismatches
     [1] 0.0241 - 0.0165 == 0.00753
    
     ── 3. Failure: nLTTstat_exact use (@test-nLTTstat_exact.R#18) ─────────────────
     0.1108467 not equal to nLTTstat_exact(tree1 = p, tree2 = q, distance_method = "abs").
     1/1 mismatches
     [1] 0.111 - 0.063 == 0.0478
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 177 SKIPPED: 1 FAILED: 3
     1. Failure: abs nLTTstat on known tree (@test-nLTTstat.R#27)
     2. Failure: squ nLTTstat on known tree (@test-nLTTstat.R#39)
     3. Failure: nLTTstat_exact use (@test-nLTTstat_exact.R#18)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 1.4
Check: tests
Result: ERROR
     Running ‘testthat.R’ [166s/185s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(nLTT) # nolint keep package name non-all-lowercase, due to backwards compatibility
     >
     > test_check("nLTT")
     [1] "/home/ripley"
    
     Generating Particles for iteration 1
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 2
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 3
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 4
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 5
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 6
     0--------25--------50--------75--------100
     *****************************************
     Generating Particles for iteration 7
     0--------25--------50--------75--------100
     *[1] "/home/ripley"
    
     Generating Chain
     0--------25--------50--------75--------100
     *********************************************
     Finished MCMC.
    
     Generating Chain
     0--------25--------50--------75--------100
     *********************************************
     Finished MCMC.
    
     Generating Chain
     0--------25--------50--------75--------100
     *********************************************
     Finished MCMC.
    
     Generating Chain
     0--------25--------50--------75--------100
     *── 1. Failure: abs nLTTstat on known tree (@test-nLTTstat.R#27) ───────────────
     0.1380347 not equal to nLTTstat(tree1 = p, tree2 = q, distance_method = "abs").
     1/1 mismatches
     [1] 0.138 - 0.105 == 0.0333
    
     ── 2. Failure: squ nLTTstat on known tree (@test-nLTTstat.R#39) ───────────────
     0.02407742 not equal to nLTTstat(tree1 = p, tree2 = q, distance_method = "squ").
     1/1 mismatches
     [1] 0.0241 - 0.0165 == 0.00753
    
     ── 3. Failure: nLTTstat_exact use (@test-nLTTstat_exact.R#18) ─────────────────
     0.1108467 not equal to nLTTstat_exact(tree1 = p, tree2 = q, distance_method = "abs").
     1/1 mismatches
     [1] 0.111 - 0.063 == 0.0478
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 177 SKIPPED: 1 FAILED: 3
     1. Failure: abs nLTTstat on known tree (@test-nLTTstat.R#27)
     2. Failure: squ nLTTstat on known tree (@test-nLTTstat.R#39)
     3. Failure: nLTTstat_exact use (@test-nLTTstat_exact.R#18)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-solaris-x86

Version: 1.4
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Error: processing vignette 'walkthrough.Rmd' failed with diagnostics:
    (converted from warning) Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Execution halted
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64