Last updated on 2019-04-13 01:58:18 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.1 | 2.99 | 39.98 | 42.97 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2.1 | 2.68 | 30.83 | 33.51 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.2.1 | 46.46 | WARN | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.1 | 39.41 | WARN | |||
| r-devel-windows-ix86+x86_64 | 1.2.1 | 9.00 | 62.00 | 71.00 | OK | --no-vignettes |
| r-patched-linux-x86_64 | 1.2.1 | 3.22 | 31.63 | 34.85 | WARN | |
| r-patched-solaris-x86 | 1.2.1 | 66.50 | ERROR | |||
| r-release-linux-x86_64 | 1.2.1 | 2.10 | 29.98 | 32.08 | ERROR | |
| r-release-windows-ix86+x86_64 | 1.2.1 | 5.00 | 41.00 | 46.00 | OK | --no-vignettes |
| r-release-osx-x86_64 | 1.2.1 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.2.1 | 3.00 | 96.00 | 99.00 | OK | --no-vignettes |
| r-oldrel-osx-x86_64 | 1.2.1 | OK |
Version: 1.2.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘rentrez_tutorial.Rmd’ using rmarkdown
Quitting from lines 296-299 (rentrez_tutorial.Rmd)
Error: processing vignette 'rentrez_tutorial.Rmd' failed with diagnostics:
Error in the HTTP2 framing layer
--- failed re-building ‘rentrez_tutorial.Rmd’
SUMMARY: processing the following file failed:
‘rentrez_tutorial.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.2.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘rentrez_tutorial.Rmd’ using rmarkdown
Quitting from lines 22-52 (rentrez_tutorial.Rmd)
Error: processing vignette 'rentrez_tutorial.Rmd' failed with diagnostics:
Error in the HTTP2 framing layer
--- failed re-building ‘rentrez_tutorial.Rmd’
SUMMARY: processing the following file failed:
‘rentrez_tutorial.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.2.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘rentrez_tutorial.Rmd’ using rmarkdown
Quitting from lines 155-158 (rentrez_tutorial.Rmd)
Error: processing vignette 'rentrez_tutorial.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘rentrez_tutorial.Rmd’
SUMMARY: processing the following file failed:
‘rentrez_tutorial.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.2.1
Check: examples
Result: ERROR
Running examples in ‘rentrez-Ex.R’ failed
The error most likely occurred in:
> ### Name: parse_pubmed_xml
> ### Title: Summarize an XML record from pubmed.
> ### Aliases: parse_pubmed_xml
>
> ### ** Examples
>
>
> hox_paper <- entrez_search(db="pubmed", term="10.1038/nature08789[doi]")
> hox_rel <- entrez_link(db="pubmed", dbfrom="pubmed", id=hox_paper$ids)
> recs <- entrez_fetch(db="pubmed",
+ id=hox_rel$links$pubmed_pubmed[1:3],
+ rettype="xml")
Error in curl::curl_fetch_memory(url, handle = handle) :
Error in the HTTP2 framing layer
Calls: entrez_fetch ... request_fetch -> request_fetch.write_memory -> <Anonymous>
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.2.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘rentrez_tutorial.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 22-52 (rentrez_tutorial.Rmd)
Error: processing vignette 'rentrez_tutorial.Rmd' failed with diagnostics:
Error in the HTTP2 framing layer
--- failed re-building ‘rentrez_tutorial.Rmd’
SUMMARY: processing the following file failed:
‘rentrez_tutorial.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.2.1
Check: examples
Result: ERROR
Running examples in ‘rentrez-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: parse_pubmed_xml
> ### Title: Summarize an XML record from pubmed.
> ### Aliases: parse_pubmed_xml
>
> ### ** Examples
>
>
> hox_paper <- entrez_search(db="pubmed", term="10.1038/nature08789[doi]")
> hox_rel <- entrez_link(db="pubmed", dbfrom="pubmed", id=hox_paper$ids)
> recs <- entrez_fetch(db="pubmed",
+ id=hox_rel$links$pubmed_pubmed[1:3],
+ rettype="xml")
Error in curl::curl_fetch_memory(url, handle = handle) :
Error in the HTTP2 framing layer
Calls: entrez_fetch ... request_fetch -> request_fetch.write_memory -> <Anonymous>
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.2.1
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Quitting from lines 94-95 (rentrez_tutorial.Rmd)
Error: processing vignette ‘rentrez_tutorial.Rmd’ failed with diagnostics:
Error in the HTTP2 framing layer
Execution halted
Flavor: r-release-linux-x86_64