CRAN Package Check Results for Package rstpm2

Last updated on 2019-04-13 01:58:20 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.4.5 110.47 109.62 220.09 OK
r-devel-linux-x86_64-debian-gcc 1.4.5 83.31 87.26 170.57 OK
r-devel-linux-x86_64-fedora-clang 1.4.5 310.44 NOTE
r-devel-linux-x86_64-fedora-gcc 1.4.5 278.22 OK
r-devel-windows-ix86+x86_64 1.4.5 239.00 191.00 430.00 NOTE
r-patched-linux-x86_64 1.4.5 98.19 110.73 208.92 OK
r-patched-solaris-x86 1.4.5 330.20 OK
r-release-linux-x86_64 1.4.5 101.11 100.17 201.28 ERROR
r-release-windows-ix86+x86_64 1.4.5 227.00 220.00 447.00 NOTE
r-release-osx-x86_64 1.4.5 ERROR
r-oldrel-windows-ix86+x86_64 1.4.5 161.00 211.00 372.00 OK
r-oldrel-osx-x86_64 1.4.5 ERROR

Additional issues

ATLAS noLD

Check Details

Version: 1.4.5
Check: installed package size
Result: NOTE
     installed size is 13.2Mb
     sub-directories of 1Mb or more:
     libs 11.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.4.5
Check: examples
Result: ERROR
    Running examples in ‘rstpm2-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: predictnl
    > ### Title: Estimation of standard errors using the numerical delta method.
    > ### Aliases: predictnl predictnl.default predictnl.lm predict.formula
    > ### print.predictnl confint.predictnl
    >
    > ### ** Examples
    >
    >
    > df <- data.frame(x=0:1, y=c(10, 20))
    > fit <- glm(y ~ x, df, family=poisson)
    >
    > predictnl(fit,
    + function(obj,newdata)
    + diff(predict(obj,newdata,type="response")))
    Error in UseMethod("predictnl") :
     no applicable method for 'predictnl' applied to an object of class "c('glm', 'lm')"
    Calls: predictnl -> predictnl
    Execution halted
Flavor: r-release-linux-x86_64

Version: 1.4.5
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: survival
    Loading required package: splines
    
    Attaching package: ‘rstpm2’
    
    The following object is masked from ‘package:survival’:
    
     colon
    
    
    Error: processing vignette ‘predictnl.Rnw’ failed with diagnostics:
     chunk 3
    Error in UseMethod("predictnl") :
     no applicable method for ‘predictnl’ applied to an object of class "test"
    Execution halted
Flavor: r-release-linux-x86_64

Version: 1.4.5
Check: tests
Result: ERROR
     Running ‘testthat.R’ [7s/7s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     >
     > test_check("rstpm2")
     ── 1. Failure: Predictions with missing values - pstpm2+frailty (@test_missing.R
     max(abs(expr - value)) is not strictly less than `eps`. Difference: 0.00142
    
     ── 2. Failure: Predictions with missing values - pstpm2+frailty (@test_missing.R
     max(abs(expr - value)) is not strictly less than `eps`. Difference: 0.00142
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 46 SKIPPED: 0 FAILED: 2
     1. Failure: Predictions with missing values - pstpm2+frailty (@test_missing.R#227)
     2. Failure: Predictions with missing values - pstpm2+frailty (@test_missing.R#227)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-osx-x86_64

Version: 1.4.5
Check: tests
Result: ERROR
     Running ‘testthat.R’ [10s/10s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     >
     > test_check("rstpm2")
     ── 1. Failure: Predictions with missing values - pstpm2+frailty (@test_missing.R
     max(abs(expr - value)) is not strictly less than `eps`. Difference: 0.00142
    
     ── 2. Failure: Predictions with missing values - pstpm2+frailty (@test_missing.R
     max(abs(expr - value)) is not strictly less than `eps`. Difference: 0.00142
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 46 SKIPPED: 0 FAILED: 2
     1. Failure: Predictions with missing values - pstpm2+frailty (@test_missing.R#227)
     2. Failure: Predictions with missing values - pstpm2+frailty (@test_missing.R#227)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-osx-x86_64