SMITIDstruct: Data Structure and Manipulations Tool for Host and Viral Population

Statistical Methods for Inferring Transmissions of Infectious Diseases from deep sequencing data (SMITID). It allow sequence-space-time host and viral population data storage, indexation and querying.

Version: 0.0.4
Depends: methods, utils, grDevices (≥ 3.0.0), graphics (≥ 3.0.0), R (≥ 3.3.0)
Imports: ggplot2, sf (≥ 0.6.3), stats (≥ 3.0.2), Biostrings (≥ 2.0.0)
Suggests: testthat (≥ 2.0)
Published: 2019-03-05
Author: Jean-Francois Rey [aut, cre]
Maintainer: Jean-Francois Rey <jean-francois.rey at>
License: GPL-2 | GPL-3 | file LICENSE [expanded from: GPL (≥ 2) | file LICENSE]
NeedsCompilation: no
CRAN checks: SMITIDstruct results


Reference manual: SMITIDstruct.pdf
Package source: SMITIDstruct_0.0.4.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X binaries: r-release: SMITIDstruct_0.0.4.tgz, r-oldrel: SMITIDstruct_0.0.4.tgz
Old sources: SMITIDstruct archive

Reverse dependencies:

Reverse suggests: SMITIDvisu


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