cRegulome: Obtain and Visualize Regulome-Gene Expression Correlations in Cancer

Builds a 'SQLite' database file of pre-calculated transcription factor/microRNA-gene correlations (co-expression) in cancer from the Cistrome Cancer Liu et al. (2011) <doi:10.1186/gb-2011-12-8-r83> and 'miRCancerdb' databases (in press). Provides custom classes and functions to query, tidy and plot the correlation data.

Version: 0.3.0
Depends: R (≥ 2.10.0)
Imports: DBI, graphics, httr, RSQLite, UpSetR, VennDiagram, ggplot2, ggridges, grid, R.utils, igraph
Suggests: knitr, rmarkdown, testthat, covr, readxl, AnnotationDbi,, clusterProfiler
Published: 2019-01-03
Author: Mahmoud Ahmed ORCID iD [aut, cre]
Maintainer: Mahmoud Ahmed <mahmoud.s.fahmy at>
License: GPL-3
NeedsCompilation: no
Materials: README NEWS
CRAN checks: cRegulome results


Reference manual: cRegulome.pdf
Vignettes: Case Study
Using cRegulome
Package source: cRegulome_0.3.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X binaries: r-release: cRegulome_0.3.0.tgz, r-oldrel: cRegulome_0.3.0.tgz
Old sources: cRegulome archive


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