CRAN Package Check Results for Package RxODE

Last updated on 2019-04-21 01:48:04 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.8.0-9 133.94 149.41 283.35 ERROR
r-devel-linux-x86_64-debian-gcc 0.8.0-9 146.39 129.53 275.92 OK
r-devel-linux-x86_64-fedora-clang 0.8.0-9 381.71 NOTE
r-devel-linux-x86_64-fedora-gcc 0.8.0-9 392.05 NOTE
r-devel-windows-ix86+x86_64 0.8.0-9 378.00 398.00 776.00 NOTE
r-patched-linux-x86_64 0.8.0-9 159.92 160.08 320.00 OK
r-patched-solaris-x86 0.8.0-9 418.50 NOTE
r-release-linux-x86_64 0.8.0-9 163.13 145.45 308.58 OK
r-release-windows-ix86+x86_64 0.8.0-9 296.00 270.00 566.00 NOTE
r-release-osx-x86_64 0.8.0-9 NOTE
r-oldrel-windows-ix86+x86_64 0.8.0-9 287.00 378.00 665.00 NOTE
r-oldrel-osx-x86_64 0.8.0-9 NOTE

Check Details

Version: 0.8.0-9
Check: tests
Result: ERROR
     Running 'testthat.R' [41s/44s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > Sys.setenv("R_TESTS" = "")
     > library(testthat)
     > library(RxODE)
     > test_check("RxODE")
     OMP: Warning #96: Cannot form a team with 32 threads, using 3 instead.
     OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
     -- 1. Error: omega chol (@test-omega-chol.R#14) -------------------------------
     BLAS/LAPACK routine 'DTRTI2' gave error code -1
     1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: v$omega
     5: `$.rxSymInvCholEnv`(v, omega)
    
     -- 2. Error: omega chol (@test-omega-chol.R#14) -------------------------------
     BLAS/LAPACK routine 'DTRTI2' gave error code -1
     1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: v$omega
     5: `$.rxSymInvCholEnv`(v, omega)
    
     -- 3. Error: omega chol (@test-omega-chol.R#14) -------------------------------
     BLAS/LAPACK routine 'DTRTI2' gave error code -1
     1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: v$omega
     5: `$.rxSymInvCholEnv`(v, omega)
    
     -- 4. Error: omega chol (@test-omega-chol.R#14) -------------------------------
     BLAS/LAPACK routine 'DTRTI2' gave error code -1
     1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: v$omega
     5: `$.rxSymInvCholEnv`(v, omega)
    
     -- 5. Error: omega chol (@test-omega-chol.R#14) -------------------------------
     BLAS/LAPACK routine 'DTRTI2' gave error code -1
     1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: v$omega
     5: `$.rxSymInvCholEnv`(v, omega)
    
     -- 6. Error: omega chol (@test-omega-chol.R#14) -------------------------------
     BLAS/LAPACK routine 'DTRTI2' gave error code -1
     1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: v$omega
     5: `$.rxSymInvCholEnv`(v, omega)
    
     -- 7. Error: omega chol (@test-omega-chol.R#14) -------------------------------
     BLAS/LAPACK routine 'DTRTI2' gave error code -1
     1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: v$omega
     5: `$.rxSymInvCholEnv`(v, omega)
    
     -- 8. Error: omega chol (@test-omega-chol.R#14) -------------------------------
     BLAS/LAPACK routine 'DTRTI2' gave error code -1
     1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: v$omega
     5: `$.rxSymInvCholEnv`(v, omega)
    
     -- 9. Error: omega chol (@test-omega-chol.R#14) -------------------------------
     BLAS/LAPACK routine 'DTRTI2' gave error code -1
     1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: v$omega
     5: `$.rxSymInvCholEnv`(v, omega)
    
     -- 10. Error: omega chol (@test-omega-chol.R#14) ------------------------------
     BLAS/LAPACK routine 'DTRTI2' gave error code -1
     1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: v$omega
     5: `$.rxSymInvCholEnv`(v, omega)
    
     -- 11. Error: omega chol (@test-omega-chol.R#14) ------------------------------
     BLAS/LAPACK routine 'DTRTI2' gave error code -1
     1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: v$omega
     5: `$.rxSymInvCholEnv`(v, omega)
    
     -- 12. Error: omega chol (@test-omega-chol.R#14) ------------------------------
     BLAS/LAPACK routine 'DTRTI2' gave error code -1
     1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: v$omega
     5: `$.rxSymInvCholEnv`(v, omega)
    
     == testthat results ===========================================================
     OK: 130 SKIPPED: 0 FAILED: 12
     1. Error: omega chol (@test-omega-chol.R#14)
     2. Error: omega chol (@test-omega-chol.R#14)
     3. Error: omega chol (@test-omega-chol.R#14)
     4. Error: omega chol (@test-omega-chol.R#14)
     5. Error: omega chol (@test-omega-chol.R#14)
     6. Error: omega chol (@test-omega-chol.R#14)
     7. Error: omega chol (@test-omega-chol.R#14)
     8. Error: omega chol (@test-omega-chol.R#14)
     9. Error: omega chol (@test-omega-chol.R#14)
     1. ...
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.8.0-9
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building 'RxODE-covariates.Rmd' using rmarkdown
    OMP: Warning #96: Cannot form a team with 32 threads, using 3 instead.
    OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
    --- finished re-building 'RxODE-covariates.Rmd'
    
    --- re-building 'RxODE-data-frame.Rmd' using rmarkdown
    OMP: Warning #96: Cannot form a team with 32 threads, using 3 instead.
    OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
    --- finished re-building 'RxODE-data-frame.Rmd'
    
    --- re-building 'RxODE-events.Rmd' using rmarkdown
    --- finished re-building 'RxODE-events.Rmd'
    
    --- re-building 'RxODE-intro.Rmd' using rmarkdown
    OMP: Warning #96: Cannot form a team with 32 threads, using 3 instead.
    OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
    --- finished re-building 'RxODE-intro.Rmd'
    
    --- re-building 'RxODE-mix-lin-ode.Rmd' using rmarkdown
    OMP: Warning #96: Cannot form a team with 32 threads, using 3 instead.
    OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
    --- finished re-building 'RxODE-mix-lin-ode.Rmd'
    
    --- re-building 'RxODE-shiny.Rmd' using rmarkdown
    --- finished re-building 'RxODE-shiny.Rmd'
    
    --- re-building 'RxODE-sim-var.Rmd' using rmarkdown
    OMP: Warning #96: Cannot form a team with 32 threads, using 3 instead.
    OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
    Quitting from lines 249-268 (RxODE-sim-var.Rmd)
    Error: processing vignette 'RxODE-sim-var.Rmd' failed with diagnostics:
    BLAS/LAPACK routine 'DTRTI2' gave error code -1
    --- failed re-building 'RxODE-sim-var.Rmd'
    
    --- re-building 'RxODE-stiff.Rmd' using rmarkdown
    OMP: Warning #96: Cannot form a team with 32 threads, using 3 instead.
    OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
    --- finished re-building 'RxODE-stiff.Rmd'
    
    --- re-building 'RxODE-syntax.Rmd' using rmarkdown
    --- finished re-building 'RxODE-syntax.Rmd'
    
    --- re-building 'RxODE-transit-compartments.Rmd' using rmarkdown
    OMP: Warning #96: Cannot form a team with 32 threads, using 3 instead.
    OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
    --- finished re-building 'RxODE-transit-compartments.Rmd'
    
    SUMMARY: processing the following file failed:
     'RxODE-sim-var.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.8.0-9
Check: installed package size
Result: NOTE
     installed size is 13.9Mb
     sub-directories of 1Mb or more:
     doc 1.6Mb
     libs 11.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.8.0-9
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘n1qn1’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.8.0-9
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'SnakeCharmR'
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.8.0-9
Check: whether package can be installed
Result: NOTE
    Found the following notes/warnings:
     Non-staged installation was used
Flavor: r-devel-windows-ix86+x86_64