CRAN Package Check Results for Package missCompare

Last updated on 2019-04-21 01:47:55 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.1 19.05 285.23 304.28 OK
r-devel-linux-x86_64-debian-gcc 1.0.1 16.87 265.31 282.18 OK
r-devel-linux-x86_64-fedora-clang 1.0.1 353.22 OK
r-devel-linux-x86_64-fedora-gcc 1.0.1 321.90 OK
r-devel-windows-ix86+x86_64 1.0.1 69.00 482.00 551.00 OK
r-patched-linux-x86_64 1.0.1 18.18 273.83 292.01 OK
r-patched-solaris-x86 1.0.1 613.80 OK
r-release-linux-x86_64 1.0.1 12.12 222.52 234.64 ERROR
r-release-windows-ix86+x86_64 1.0.1 24.00 500.00 524.00 OK
r-release-osx-x86_64 1.0.1 OK
r-oldrel-osx-x86_64 1.0.1 ERROR

Check Details

Version: 1.0.1
Check: tests
Result: ERROR
     Running ‘testthat.R’ [43s/93s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(missCompare)
    
     Attaching package: 'missCompare'
    
     The following object is masked from 'package:stats':
    
     simulate
    
     >
     > test_check("missCompare")
     [1] "random replacement imputation - in progress"
     [1] "mice mixed imputation - in progress"
     [1] "mi imputation - in progress"
     starting worker pid=21384 on localhost:11975 at 10:14:15.756
     starting worker pid=21520 on localhost:11975 at 10:14:16.220
     [1] "missForest imputation - in progress"
     Warning messages:
     1: algorithm did not converge
     2: algorithm did not converge
     3: algorithm did not converge
     4: algorithm did not converge
     5: algorithm did not converge
     6: algorithm did not converge
     7: algorithm did not converge
     8: algorithm did not converge
     9: algorithm did not converge
     [1] "Hmisc aregImpute imputation - in progress"
     [1] "VIM kNN imputation - in progress"
     [1] "random replacement imputation - in progress"
     [1] "mice mixed imputation - in progress"
     [1] "mi imputation - in progress"
     starting worker pid=27059 on localhost:11975 at 10:14:30.702
     starting worker pid=27130 on localhost:11975 at 10:14:31.261
     Warning messages:
     1: algorithm did not converge
     2: algorithm did not converge
     3: algorithm did not converge
     4: algorithm did not converge
     5: algorithm did not converge
     6: algorithm did not converge
     7: algorithm did not converge
     8: In .local(y, data, ...) :
     bayesglm() did not converge for variable sex on iteration 100
     [1] "missForest imputation - in progress"
     [1] "Hmisc aregImpute imputation - in progress"
     [1] "VIM kNN imputation - in progress"
     [1] "random replacement imputation - in progress"
     [1] "Median imputation - in progress"
     [1] "Mean imputation - in progress"
     [1] "missMDA regularized imputation - in progress"
     [1] "missMDA EM imputation - in progress"
     [1] "pcaMethods PPCA imputation - in progress"
     [1] "pcaMethods svdImpute imputation - in progress"
     [1] "pcaMethods BPCA imputation - in progress"
     [1] "pcaMethods NIPALS imputation - in progress"
     [1] "pcaMethods NLPCA imputation - in progress"
     [1] "mice mixed imputation - in progress"
     [1] "mi imputation - in progress"
     starting worker pid=3881 on localhost:11975 at 10:14:57.992
     starting worker pid=4057 on localhost:11975 at 10:14:58.346
     [1] "Amelia II imputation - in progress"
     [1] "missForest imputation - in progress"
     [1] "Hmisc aregImpute imputation - in progress"
     [1] "VIM kNN imputation - in progress"
     [1] "random replacement imputation - in progress"
     [1] "Median imputation - in progress"
     [1] "Mean imputation - in progress"
     [1] "missMDA regularized imputation - in progress"
     [1] "missMDA EM imputation - in progress"
     [1] "pcaMethods PPCA imputation - in progress"
     [1] "pcaMethods svdImpute imputation - in progress"
     [1] "pcaMethods BPCA imputation - in progress"
     [1] "pcaMethods NIPALS imputation - in progress"
     [1] "pcaMethods NLPCA imputation - in progress"
     [1] "mice mixed imputation - in progress"
     [1] "mi imputation - in progress"
     starting worker pid=11959 on localhost:11975 at 10:15:23.794
     starting worker pid=12063 on localhost:11975 at 10:15:24.463
     [1] "Amelia II imputation - in progress"
     [1] "missForest imputation - in progress"
     [1] "Hmisc aregImpute imputation - in progress"
     [1] "VIM kNN imputation - in progress"
     [1] "Median imputation - in progress"
     [1] "Mean imputation - in progress"
     [1] "missMDA regularized imputation - in progress"
     [1] "missMDA EM imputation - in progress"
     [1] "pcaMethods svdImpute imputation - in progress"
     [1] "pcaMethods BPCA imputation - in progress"
     [1] "pcaMethods NIPALS imputation - in progress"
     [1] "VIM kNN imputation - in progress"
     [1] "random replacement imputation - in progress"
     ── 1. Error: (unknown) (@test.imp_simulation.R#10) ────────────────────────────
     missing value where TRUE/FALSE needed
     1: all_patterns(X_hat = simulated$Simulated_matrix, MD_pattern = y$MD_Pattern, NA_fraction = y$Fraction_missingness,
     min_PDM = 2) at testthat/test.imp_simulation.R:10
     2: MNAR(X_hat, MD_pattern = MD_pattern, NA_fraction = NA_fraction, min_PDM = min_PDM)
     3: mice::ampute(X_hat, prop = NA_fraction, patterns = MD_pattern_simple, freq = myfreq,
     bycases = F, mech = "MNAR")
     4: ampute.continuous(P = P, scores = scores, prop = round(prop, 3), type = type)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 35 SKIPPED: 0 FAILED: 1
     1. Error: (unknown) (@test.imp_simulation.R#10)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-linux-x86_64

Version: 1.0.1
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-oldrel-osx-x86_64