CRAN Package Check Results for Package ordinal

Last updated on 2019-04-22 01:47:50 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2019.3-9 18.01 214.11 232.12 ERROR
r-devel-linux-x86_64-debian-gcc 2019.3-9 12.71 165.21 177.92 ERROR
r-devel-linux-x86_64-fedora-clang 2019.3-9 275.35 ERROR
r-devel-linux-x86_64-fedora-gcc 2019.3-9 252.69 ERROR
r-devel-windows-ix86+x86_64 2019.3-9 38.00 332.00 370.00 OK
r-patched-linux-x86_64 2019.3-9 16.87 213.49 230.36 OK
r-patched-solaris-x86 2019.3-9 382.00 OK
r-release-linux-x86_64 2019.3-9 11.03 212.15 223.18 OK
r-release-windows-ix86+x86_64 2019.3-9 26.00 440.00 466.00 OK
r-release-osx-x86_64 2019.3-9 OK
r-oldrel-windows-ix86+x86_64 2019.3-9 24.00 430.00 454.00 OK
r-oldrel-osx-x86_64 2019.3-9 OK

Check Details

Version: 2019.3-9
Check: tests
Result: ERROR
     Running 'anova.R' [2s/3s]
     Running 'clm.fit.R' [3s/3s]
     Running 'clm.formula.R' [2s/2s]
     Running 'clmm.R' [8s/9s]
     Running 'clmm.control.R' [2s/2s]
     Running 'clmm.formula.R' [2s/2s]
     Running 'confint.R' [4s/4s]
     Running 'nominal.test.R' [6s/6s]
     Running 'test-all.R' [23s/24s]
     Running 'test.clm.Theta.R' [4s/4s]
     Running 'test.clm.convergence.R' [2s/3s]
     Running 'test.clm.flex.link.R' [3s/3s]
     Running 'test.clm.model.matrix.R' [2s/3s]
     Running 'test.clm.predict.R' [2s/3s]
     Running 'test.clm.profile.R' [2s/2s]
     Running 'test.clm.single.anova.R' [3s/3s]
     Running 'test.general.R' [0s/0s]
     Running 'test.makeThresholds.R' [2s/2s]
     Running 'test.sign.R' [3s/3s]
     Running 'test0weights.R' [3s/4s]
     Running 'testAnova.clm2.R' [3s/3s]
     Running 'testCLM.R' [4s/4s]
    Running the tests in 'tests/clm.formula.R' failed.
    Complete output:
     > library(ordinal)
     > ## library(devtools)
     > ## r2path <- "/Users/rhbc/Documents/Rpackages/ordinal/pkg/ordinal"
     > ## clean_dll(pkg = r2path)
     > ## load_all(r2path)
     >
     > #################################
     > ## Appropriate evaluation of formulas:
     >
     > ## These fail and give appropriate error messages:
     > ## fm1 <- clm(rating ~ contact, scale=temp, data=wine)
     > ## fm1 <- clm(rating ~ contact, scale=~Temp, data=wine)
     > ## fm1 <- clm(rating ~ contact, scale="temp", data=wine)
     > ## sca <- "temp"
     > ## fm1 <- clm(rating ~ contact, scale=sca, data=wine)
     > ## sca <- as.formula(sca)
     > ## sca <- as.formula(temp)
     > ## sca <- with(wine, as.formula(temp))
     >
     > ## These all work as intended with no warnings or errors:
     > fm1 <- clm(rating ~ contact, scale="~temp", data=wine)
     Error in get_clmFormulas(mc, call.envir) :
     unable to interpret 'formula', 'scale' or 'nominal'
     Calls: clm -> get_clmFormulas
     Execution halted
    Running the tests in 'tests/clmm.formula.R' failed.
    Complete output:
     > library(ordinal)
     > data(wine)
     >
     > #################################
     > ## Appropriate evaluation of formulas:
     >
     > ## These all work as intended with no warnings or errors:
     > fm1 <- clmm(rating ~ contact + (1|judge), data=wine)
     > fm1
     Cumulative Link Mixed Model fitted with the Laplace approximation
    
     formula: rating ~ contact + (1 | judge)
     data: wine
    
     link threshold nobs logLik AIC niter max.grad
     logit flexible 72 -98.80 209.59 228(686) 3.67e-06
    
     Random effects:
     Groups Name Variance Std.Dev.
     judge (Intercept) 0.4428 0.6654
     Number of groups: judge 9
    
     Coefficients:
     contactyes
     1.3
    
     Thresholds:
     1|2 2|3 3|4 4|5
     -2.28331 0.04325 1.86062 3.20298
     > fm1 <- clmm("rating ~ contact + (1|judge)", data=wine)
     Error in clmm.formulae(formula = formula) : unable to interpret 'formula'
     Calls: clmm -> clmm.formulae
     Execution halted
    Running the tests in 'tests/test-all.R' failed.
    Complete output:
     >
     > if(require(testthat) && require(ordinal)) {
     + test_check("ordinal")
     + }
     Loading required package: testthat
     Loading required package: ordinal
     -- 1. Error: standard formulae are interpreted correctly/give right error messag
     unable to interpret 'formula', 'scale' or 'nominal'
     1: clm(rating ~ contact, scale = "~temp", data = wine) at testthat/test-clm-formula.R:23
     2: get_clmFormulas(mc, call.envir)
     3: stop("unable to interpret 'formula', 'scale' or 'nominal'")
    
     -- 2. Error: clm may be invoked within functions (@test-clm-formula.R#149) ----
     unable to interpret 'formula', 'scale' or 'nominal'
     1: expect_is(fun.clm(form1, data = wine), "clm") at testthat/test-clm-formula.R:149
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: fun.clm(form1, data = wine)
     5: clm(formula, data = data) at testthat/test-clm-formula.R:127
     6: get_clmFormulas(mc, call.envir)
     7: stop("unable to interpret 'formula', 'scale' or 'nominal'")
    
     == testthat results ===========================================================
     OK: 66 SKIPPED: 0 FAILED: 2
     1. Error: standard formulae are interpreted correctly/give right error messages (@test-clm-formula.R#23)
     2. Error: clm may be invoked within functions (@test-clm-formula.R#149)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 2019.3-9
Check: tests
Result: ERROR
     Running ‘anova.R’ [2s/3s]
     Running ‘clm.fit.R’ [2s/2s]
     Running ‘clm.formula.R’ [1s/2s]
     Running ‘clmm.R’ [6s/8s]
     Running ‘clmm.control.R’ [2s/2s]
     Running ‘clmm.formula.R’ [2s/3s]
     Running ‘confint.R’ [3s/4s]
     Running ‘nominal.test.R’ [4s/6s]
     Running ‘test-all.R’ [17s/22s]
     Running ‘test.clm.Theta.R’ [3s/4s]
     Running ‘test.clm.convergence.R’ [2s/3s]
     Running ‘test.clm.flex.link.R’ [2s/3s]
     Running ‘test.clm.model.matrix.R’ [2s/3s]
     Running ‘test.clm.predict.R’ [2s/3s]
     Running ‘test.clm.profile.R’ [2s/3s]
     Running ‘test.clm.single.anova.R’ [2s/3s]
     Running ‘test.general.R’ [0s/1s]
     Running ‘test.makeThresholds.R’ [2s/3s]
     Running ‘test.sign.R’ [2s/3s]
     Running ‘test0weights.R’ [3s/3s]
     Running ‘testAnova.clm2.R’ [2s/3s]
     Running ‘testCLM.R’ [3s/4s]
    Running the tests in ‘tests/clm.formula.R’ failed.
    Complete output:
     > library(ordinal)
     > ## library(devtools)
     > ## r2path <- "/Users/rhbc/Documents/Rpackages/ordinal/pkg/ordinal"
     > ## clean_dll(pkg = r2path)
     > ## load_all(r2path)
     >
     > #################################
     > ## Appropriate evaluation of formulas:
     >
     > ## These fail and give appropriate error messages:
     > ## fm1 <- clm(rating ~ contact, scale=temp, data=wine)
     > ## fm1 <- clm(rating ~ contact, scale=~Temp, data=wine)
     > ## fm1 <- clm(rating ~ contact, scale="temp", data=wine)
     > ## sca <- "temp"
     > ## fm1 <- clm(rating ~ contact, scale=sca, data=wine)
     > ## sca <- as.formula(sca)
     > ## sca <- as.formula(temp)
     > ## sca <- with(wine, as.formula(temp))
     >
     > ## These all work as intended with no warnings or errors:
     > fm1 <- clm(rating ~ contact, scale="~temp", data=wine)
     Error in get_clmFormulas(mc, call.envir) :
     unable to interpret 'formula', 'scale' or 'nominal'
     Calls: clm -> get_clmFormulas
     Execution halted
    Running the tests in ‘tests/clmm.formula.R’ failed.
    Complete output:
     > library(ordinal)
     > data(wine)
     >
     > #################################
     > ## Appropriate evaluation of formulas:
     >
     > ## These all work as intended with no warnings or errors:
     > fm1 <- clmm(rating ~ contact + (1|judge), data=wine)
     > fm1
     Cumulative Link Mixed Model fitted with the Laplace approximation
    
     formula: rating ~ contact + (1 | judge)
     data: wine
    
     link threshold nobs logLik AIC niter max.grad
     logit flexible 72 -98.80 209.59 228(686) 3.67e-06
    
     Random effects:
     Groups Name Variance Std.Dev.
     judge (Intercept) 0.4428 0.6654
     Number of groups: judge 9
    
     Coefficients:
     contactyes
     1.3
    
     Thresholds:
     1|2 2|3 3|4 4|5
     -2.28331 0.04325 1.86062 3.20298
     > fm1 <- clmm("rating ~ contact + (1|judge)", data=wine)
     Error in clmm.formulae(formula = formula) : unable to interpret 'formula'
     Calls: clmm -> clmm.formulae
     Execution halted
    Running the tests in ‘tests/test-all.R’ failed.
    Complete output:
     >
     > if(require(testthat) && require(ordinal)) {
     + test_check("ordinal")
     + }
     Loading required package: testthat
     Loading required package: ordinal
     ── 1. Error: standard formulae are interpreted correctly/give right error messag
     unable to interpret 'formula', 'scale' or 'nominal'
     1: clm(rating ~ contact, scale = "~temp", data = wine) at testthat/test-clm-formula.R:23
     2: get_clmFormulas(mc, call.envir)
     3: stop("unable to interpret 'formula', 'scale' or 'nominal'")
    
     ── 2. Error: clm may be invoked within functions (@test-clm-formula.R#149) ────
     unable to interpret 'formula', 'scale' or 'nominal'
     1: expect_is(fun.clm(form1, data = wine), "clm") at testthat/test-clm-formula.R:149
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: fun.clm(form1, data = wine)
     5: clm(formula, data = data) at testthat/test-clm-formula.R:127
     6: get_clmFormulas(mc, call.envir)
     7: stop("unable to interpret 'formula', 'scale' or 'nominal'")
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 67 SKIPPED: 0 FAILED: 2
     1. Error: standard formulae are interpreted correctly/give right error messages (@test-clm-formula.R#23)
     2. Error: clm may be invoked within functions (@test-clm-formula.R#149)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 2019.3-9
Check: tests
Result: ERROR
     Running ‘anova.R’
     Running ‘clm.fit.R’
     Running ‘clm.formula.R’
     Running ‘clmm.R’ [10s/24s]
     Running ‘clmm.control.R’
     Running ‘clmm.formula.R’
     Running ‘confint.R’ [5s/13s]
     Running ‘nominal.test.R’ [7s/16s]
     Running ‘test-all.R’ [28s/63s]
     Running ‘test.clm.Theta.R’
     Running ‘test.clm.convergence.R’
     Running ‘test.clm.flex.link.R’
     Running ‘test.clm.model.matrix.R’
     Running ‘test.clm.predict.R’
     Running ‘test.clm.profile.R’
     Running ‘test.clm.single.anova.R’
     Running ‘test.general.R’
     Running ‘test.makeThresholds.R’
     Running ‘test.sign.R’
     Running ‘test0weights.R’ [4s/11s]
     Running ‘testAnova.clm2.R’
     Running ‘testCLM.R’ [5s/13s]
    Running the tests in ‘tests/clm.formula.R’ failed.
    Complete output:
     > library(ordinal)
     > ## library(devtools)
     > ## r2path <- "/Users/rhbc/Documents/Rpackages/ordinal/pkg/ordinal"
     > ## clean_dll(pkg = r2path)
     > ## load_all(r2path)
     >
     > #################################
     > ## Appropriate evaluation of formulas:
     >
     > ## These fail and give appropriate error messages:
     > ## fm1 <- clm(rating ~ contact, scale=temp, data=wine)
     > ## fm1 <- clm(rating ~ contact, scale=~Temp, data=wine)
     > ## fm1 <- clm(rating ~ contact, scale="temp", data=wine)
     > ## sca <- "temp"
     > ## fm1 <- clm(rating ~ contact, scale=sca, data=wine)
     > ## sca <- as.formula(sca)
     > ## sca <- as.formula(temp)
     > ## sca <- with(wine, as.formula(temp))
     >
     > ## These all work as intended with no warnings or errors:
     > fm1 <- clm(rating ~ contact, scale="~temp", data=wine)
     Error in get_clmFormulas(mc, call.envir) :
     unable to interpret 'formula', 'scale' or 'nominal'
     Calls: clm -> get_clmFormulas
     Execution halted
    Running the tests in ‘tests/clmm.formula.R’ failed.
    Complete output:
     > library(ordinal)
     > data(wine)
     >
     > #################################
     > ## Appropriate evaluation of formulas:
     >
     > ## These all work as intended with no warnings or errors:
     > fm1 <- clmm(rating ~ contact + (1|judge), data=wine)
     > fm1
     Cumulative Link Mixed Model fitted with the Laplace approximation
    
     formula: rating ~ contact + (1 | judge)
     data: wine
    
     link threshold nobs logLik AIC niter max.grad
     logit flexible 72 -98.80 209.59 228(686) 3.67e-06
    
     Random effects:
     Groups Name Variance Std.Dev.
     judge (Intercept) 0.4428 0.6654
     Number of groups: judge 9
    
     Coefficients:
     contactyes
     1.3
    
     Thresholds:
     1|2 2|3 3|4 4|5
     -2.28331 0.04325 1.86062 3.20298
     > fm1 <- clmm("rating ~ contact + (1|judge)", data=wine)
     Error in clmm.formulae(formula = formula) : unable to interpret 'formula'
     Calls: clmm -> clmm.formulae
     Execution halted
    Running the tests in ‘tests/test-all.R’ failed.
    Complete output:
     >
     > if(require(testthat) && require(ordinal)) {
     + test_check("ordinal")
     + }
     Loading required package: testthat
     Loading required package: ordinal
     ── 1. Error: standard formulae are interpreted correctly/give right error messag
     unable to interpret 'formula', 'scale' or 'nominal'
     1: clm(rating ~ contact, scale = "~temp", data = wine) at testthat/test-clm-formula.R:23
     2: get_clmFormulas(mc, call.envir)
     3: stop("unable to interpret 'formula', 'scale' or 'nominal'")
    
     ── 2. Error: clm may be invoked within functions (@test-clm-formula.R#149) ────
     unable to interpret 'formula', 'scale' or 'nominal'
     1: expect_is(fun.clm(form1, data = wine), "clm") at testthat/test-clm-formula.R:149
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: fun.clm(form1, data = wine)
     5: clm(formula, data = data) at testthat/test-clm-formula.R:127
     6: get_clmFormulas(mc, call.envir)
     7: stop("unable to interpret 'formula', 'scale' or 'nominal'")
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 67 SKIPPED: 0 FAILED: 2
     1. Error: standard formulae are interpreted correctly/give right error messages (@test-clm-formula.R#23)
     2. Error: clm may be invoked within functions (@test-clm-formula.R#149)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 2019.3-9
Check: tests
Result: ERROR
     Running ‘anova.R’
     Running ‘clm.fit.R’
     Running ‘clm.formula.R’
     Running ‘clmm.R’
     Running ‘clmm.control.R’
     Running ‘clmm.formula.R’
     Running ‘confint.R’
     Running ‘nominal.test.R’
     Running ‘test-all.R’ [25s/26s]
     Running ‘test.clm.Theta.R’
     Running ‘test.clm.convergence.R’
     Running ‘test.clm.flex.link.R’
     Running ‘test.clm.model.matrix.R’
     Running ‘test.clm.predict.R’
     Running ‘test.clm.profile.R’
     Running ‘test.clm.single.anova.R’
     Running ‘test.general.R’
     Running ‘test.makeThresholds.R’
     Running ‘test.sign.R’
     Running ‘test0weights.R’
     Running ‘testAnova.clm2.R’
     Running ‘testCLM.R’
    Running the tests in ‘tests/clm.formula.R’ failed.
    Complete output:
     > library(ordinal)
     > ## library(devtools)
     > ## r2path <- "/Users/rhbc/Documents/Rpackages/ordinal/pkg/ordinal"
     > ## clean_dll(pkg = r2path)
     > ## load_all(r2path)
     >
     > #################################
     > ## Appropriate evaluation of formulas:
     >
     > ## These fail and give appropriate error messages:
     > ## fm1 <- clm(rating ~ contact, scale=temp, data=wine)
     > ## fm1 <- clm(rating ~ contact, scale=~Temp, data=wine)
     > ## fm1 <- clm(rating ~ contact, scale="temp", data=wine)
     > ## sca <- "temp"
     > ## fm1 <- clm(rating ~ contact, scale=sca, data=wine)
     > ## sca <- as.formula(sca)
     > ## sca <- as.formula(temp)
     > ## sca <- with(wine, as.formula(temp))
     >
     > ## These all work as intended with no warnings or errors:
     > fm1 <- clm(rating ~ contact, scale="~temp", data=wine)
     Error in get_clmFormulas(mc, call.envir) :
     unable to interpret 'formula', 'scale' or 'nominal'
     Calls: clm -> get_clmFormulas
     Execution halted
    Running the tests in ‘tests/clmm.formula.R’ failed.
    Complete output:
     > library(ordinal)
     > data(wine)
     >
     > #################################
     > ## Appropriate evaluation of formulas:
     >
     > ## These all work as intended with no warnings or errors:
     > fm1 <- clmm(rating ~ contact + (1|judge), data=wine)
     > fm1
     Cumulative Link Mixed Model fitted with the Laplace approximation
    
     formula: rating ~ contact + (1 | judge)
     data: wine
    
     link threshold nobs logLik AIC niter max.grad
     logit flexible 72 -98.80 209.59 228(686) 3.67e-06
    
     Random effects:
     Groups Name Variance Std.Dev.
     judge (Intercept) 0.4428 0.6654
     Number of groups: judge 9
    
     Coefficients:
     contactyes
     1.3
    
     Thresholds:
     1|2 2|3 3|4 4|5
     -2.28331 0.04325 1.86062 3.20298
     > fm1 <- clmm("rating ~ contact + (1|judge)", data=wine)
     Error in clmm.formulae(formula = formula) : unable to interpret 'formula'
     Calls: clmm -> clmm.formulae
     Execution halted
    Running the tests in ‘tests/test-all.R’ failed.
    Complete output:
     >
     > if(require(testthat) && require(ordinal)) {
     + test_check("ordinal")
     + }
     Loading required package: testthat
     Loading required package: ordinal
     ── 1. Error: standard formulae are interpreted correctly/give right error messag
     unable to interpret 'formula', 'scale' or 'nominal'
     1: clm(rating ~ contact, scale = "~temp", data = wine) at testthat/test-clm-formula.R:23
     2: get_clmFormulas(mc, call.envir)
     3: stop("unable to interpret 'formula', 'scale' or 'nominal'")
    
     ── 2. Error: clm may be invoked within functions (@test-clm-formula.R#149) ────
     unable to interpret 'formula', 'scale' or 'nominal'
     1: expect_is(fun.clm(form1, data = wine), "clm") at testthat/test-clm-formula.R:149
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: fun.clm(form1, data = wine)
     5: clm(formula, data = data) at testthat/test-clm-formula.R:127
     6: get_clmFormulas(mc, call.envir)
     7: stop("unable to interpret 'formula', 'scale' or 'nominal'")
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 67 SKIPPED: 0 FAILED: 2
     1. Error: standard formulae are interpreted correctly/give right error messages (@test-clm-formula.R#23)
     2. Error: clm may be invoked within functions (@test-clm-formula.R#149)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc