CRAN Package Check Results for Package tmle.npvi

Last updated on 2019-04-22 01:48:02 CEST.

Check Details

Version: 0.10.0
Check: R code for possible problems
Result: NOTE
    NPVI: no visible global function definition for 'quantile'
    SL.glm.condExpX2givenW: no visible global function definition for
     'as.formula'
    SL.glm.condExpX2givenW: no visible global function definition for 'glm'
    SL.glm.condExpXYgivenW: no visible global function definition for
     'as.formula'
    SL.glm.condExpXYgivenW: no visible global function definition for 'glm'
    SL.glm.g: no visible global function definition for 'as.formula'
    SL.glm.g: no visible global function definition for 'glm'
    SL.glm.theta: no visible global function definition for 'as.formula'
    SL.glm.theta: no visible global function definition for 'glm'
    as.character.NPVI: no visible global function definition for 'qnorm'
    as.character.NPVI: no visible global function definition for 'pnorm'
    estimateDevG: no visible global function definition for 'gaussian'
    estimateDevMu: no visible global function definition for 'gaussian'
    estimateDevTheta: no visible global function definition for 'gaussian'
    estimateEpsilon.NPVI: no visible global function definition for
     'optimize'
    estimateG: no visible global function definition for 'binomial'
    estimateMuAux: no visible global function definition for 'gaussian'
    estimatePsi: no visible global function definition for 'str'
    estimatePsi: no visible global function definition for 'sd'
    estimateTheta: no visible global function definition for 'gaussian'
    getPValue.matrix: no visible global function definition for 'pnorm'
    getSample: no visible global function definition for 'runif'
    getSample: no visible binding for global variable 'qlogis'
    getSample: no visible binding for global variable 'plogis'
    getSample: no visible global function definition for 'rnorm'
    getSample: no visible global function definition for 'str'
    getSample : condProbUW: no visible global function definition for
     'dnorm'
    getSample : condProbUXW: no visible global function definition for
     'dnorm'
    getSample : foo: no visible global function definition for 'dnorm'
    getSample: no visible global function definition for 'integrate'
    getSample : effIC: no visible global function definition for 'str'
    getSample: no visible global function definition for 'var'
    getSic.NPVI: no visible global function definition for 'sd'
    getSicAlt.NPVI: no visible global function definition for 'sd'
    init.NPVI: no visible global function definition for 'str'
    linearInterpolations: no visible global function definition for 'head'
    linearInterpolations: no visible global function definition for 'tail'
    partialCorrelation: no visible global function definition for 'var'
    simulateData: no visible global function definition for 'runif'
    simulateData: no visible global function definition for 'rnorm'
    simulateData: no visible global function definition for 'sd'
    simulateParsimoniouslyXgivenW: no visible global function definition
     for 'runif'
    simulateParsimoniouslyYgivenXW: no visible global function definition
     for 'runif'
    tmle.npvi: no visible global function definition for 'quantile'
    tmle.npvi.: no visible global function definition for 'quantile'
    tmle.npvi.: no visible global function definition for 'model.matrix'
    tmle.npvi.: no visible global function definition for 'update'
    update.NPVI: no visible global function definition for 'gaussian'
    updateConv.NPVI: no visible global function definition for 'tail'
    updateGNonTab.NPVI : g1: no visible binding for global variable
     'qlogis'
    updateGNonTab.NPVI : g1: no visible binding for global variable
     'plogis'
    updateGTab.NPVI: no visible binding for global variable 'qlogis'
    updateGTab.NPVI: no visible binding for global variable 'plogis'
    updatePsi.NPVI: no visible global function definition for 'str'
    Undefined global functions or variables:
     as.formula binomial dnorm gaussian glm head integrate model.matrix
     optimize plogis pnorm qlogis qnorm quantile rnorm runif sd str tail
     update var
    Consider adding
     importFrom("stats", "as.formula", "binomial", "dnorm", "gaussian",
     "glm", "integrate", "model.matrix", "optimize", "plogis",
     "pnorm", "qlogis", "qnorm", "quantile", "rnorm", "runif",
     "sd", "update", "var")
     importFrom("utils", "head", "str", "tail")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.10.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning: running command 'kpsewhich framed.sty' had status 1
    Warning in test_latex_pkg("framed", system.file("misc", "framed.sty", package = "knitr")) :
     unable to find LaTeX package 'framed'; will use a copy from knitr
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'tmle-npvi.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `manfnt.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.59 \usepackage
     [textwidth=15cm, textheight=23cm]{geometry}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-oldrel-osx-x86_64