Detrend fluorescence microscopy image series for fluorescence fluctuation and correlation spectroscopy ('FCS' and 'FFS') analysis. This package contains functionality published in a 2016 paper <doi:10.1093/bioinformatics/btx434> but it has been extended since then with the Robin Hood algorithm and thus contains unpublished work.
Version: | 0.6.1 |
Imports: | Rcpp, RcppParallel, parallel, checkmate, magrittr, dplyr, foreach, doParallel, iterators, purrr, ijtiff (≥ 1.5.0), autothresholdr (≥ 1.3.0), rlang, stringr, filesstrings (≥ 3.0.0), plyr, glue (≥ 1.3.0), sigmoid, matrixStats, stringi, assertthat |
LinkingTo: | Rcpp, RcppParallel |
Suggests: | testthat, knitr, rmarkdown, covr, abind, lattice, pacman, tidyr, graphics, gridExtra, arrayhelpers, ore (≥ 1.4.0), clipr, styler, MASS, mgcv, spelling |
Published: | 2019-04-13 |
Author: | Rory Nolan |
Maintainer: | Rory Nolan <rorynoolan at gmail.com> |
BugReports: | https://www.github.com/rorynolan/detrendr/issues |
License: | BSD_3_clause + file LICENSE |
URL: | https://rorynolan.github.io/detrendr, https://www.github.com/rorynolan/detrendr |
NeedsCompilation: | yes |
SystemRequirements: | GNU make |
Language: | en-US |
Citation: | detrendr citation info |
Materials: | NEWS |
CRAN checks: | detrendr results |
Reference manual: | detrendr.pdf |
Vignettes: |
Batch mode Detrending single images |
Package source: | detrendr_0.6.1.tar.gz |
Windows binaries: | r-devel: detrendr_0.6.1.zip, r-release: detrendr_0.6.1.zip, r-oldrel: detrendr_0.6.1.zip |
OS X binaries: | r-release: detrendr_0.6.1.tgz, r-oldrel: detrendr_0.6.0.tgz |
Old sources: | detrendr archive |
Reverse imports: | nandb |
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