Last updated on 2019-05-01 01:52:02 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.8.0-9 | 129.05 | 150.75 | 279.80 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.8.0-9 | 142.29 | 122.25 | 264.54 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.8.0-9 | 401.47 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.8.0-9 | 390.08 | NOTE | |||
| r-patched-linux-x86_64 | 0.8.0-9 | 157.17 | 158.60 | 315.77 | OK | |
| r-patched-solaris-x86 | 0.8.0-9 | 468.70 | NOTE | |||
| r-release-linux-x86_64 | 0.8.0-9 | 164.73 | 153.19 | 317.92 | ERROR | |
| r-release-windows-ix86+x86_64 | 0.8.0-9 | 368.00 | 280.00 | 648.00 | NOTE | |
| r-release-osx-x86_64 | 0.8.0-9 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 0.8.0-9 | 362.00 | 396.00 | 758.00 | NOTE | |
| r-oldrel-osx-x86_64 | 0.8.0-9 | NOTE |
Version: 0.8.0-9
Check: use of PKG_*FLAGS in Makefiles
Result: NOTE
PKG_FCFLAGS set in 'src/Makevars.in' without any corresponding files
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.8.0-9
Check: tests
Result: ERROR
Running 'testthat.R' [42s/45s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> Sys.setenv("R_TESTS" = "")
> library(testthat)
> library(RxODE)
> test_check("RxODE")
OMP: Warning #96: Cannot form a team with 32 threads, using 3 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
-- 1. Error: omega chol (@test-omega-chol.R#14) -------------------------------
BLAS/LAPACK routine 'DTRTI2' gave error code -1
1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
2: quasi_label(enquo(object), label, arg = "object")
3: eval_bare(get_expr(quo), get_env(quo))
4: v$omega
5: `$.rxSymInvCholEnv`(v, omega)
-- 2. Error: omega chol (@test-omega-chol.R#14) -------------------------------
BLAS/LAPACK routine 'DTRTI2' gave error code -1
1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
2: quasi_label(enquo(object), label, arg = "object")
3: eval_bare(get_expr(quo), get_env(quo))
4: v$omega
5: `$.rxSymInvCholEnv`(v, omega)
-- 3. Error: omega chol (@test-omega-chol.R#14) -------------------------------
BLAS/LAPACK routine 'DTRTI2' gave error code -1
1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
2: quasi_label(enquo(object), label, arg = "object")
3: eval_bare(get_expr(quo), get_env(quo))
4: v$omega
5: `$.rxSymInvCholEnv`(v, omega)
-- 4. Error: omega chol (@test-omega-chol.R#14) -------------------------------
BLAS/LAPACK routine 'DTRTI2' gave error code -1
1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
2: quasi_label(enquo(object), label, arg = "object")
3: eval_bare(get_expr(quo), get_env(quo))
4: v$omega
5: `$.rxSymInvCholEnv`(v, omega)
-- 5. Error: omega chol (@test-omega-chol.R#14) -------------------------------
BLAS/LAPACK routine 'DTRTI2' gave error code -1
1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
2: quasi_label(enquo(object), label, arg = "object")
3: eval_bare(get_expr(quo), get_env(quo))
4: v$omega
5: `$.rxSymInvCholEnv`(v, omega)
-- 6. Error: omega chol (@test-omega-chol.R#14) -------------------------------
BLAS/LAPACK routine 'DTRTI2' gave error code -1
1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
2: quasi_label(enquo(object), label, arg = "object")
3: eval_bare(get_expr(quo), get_env(quo))
4: v$omega
5: `$.rxSymInvCholEnv`(v, omega)
-- 7. Error: omega chol (@test-omega-chol.R#14) -------------------------------
BLAS/LAPACK routine 'DTRTI2' gave error code -1
1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
2: quasi_label(enquo(object), label, arg = "object")
3: eval_bare(get_expr(quo), get_env(quo))
4: v$omega
5: `$.rxSymInvCholEnv`(v, omega)
-- 8. Error: omega chol (@test-omega-chol.R#14) -------------------------------
BLAS/LAPACK routine 'DTRTI2' gave error code -1
1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
2: quasi_label(enquo(object), label, arg = "object")
3: eval_bare(get_expr(quo), get_env(quo))
4: v$omega
5: `$.rxSymInvCholEnv`(v, omega)
-- 9. Error: omega chol (@test-omega-chol.R#14) -------------------------------
BLAS/LAPACK routine 'DTRTI2' gave error code -1
1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
2: quasi_label(enquo(object), label, arg = "object")
3: eval_bare(get_expr(quo), get_env(quo))
4: v$omega
5: `$.rxSymInvCholEnv`(v, omega)
-- 10. Error: omega chol (@test-omega-chol.R#14) ------------------------------
BLAS/LAPACK routine 'DTRTI2' gave error code -1
1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
2: quasi_label(enquo(object), label, arg = "object")
3: eval_bare(get_expr(quo), get_env(quo))
4: v$omega
5: `$.rxSymInvCholEnv`(v, omega)
-- 11. Error: omega chol (@test-omega-chol.R#14) ------------------------------
BLAS/LAPACK routine 'DTRTI2' gave error code -1
1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
2: quasi_label(enquo(object), label, arg = "object")
3: eval_bare(get_expr(quo), get_env(quo))
4: v$omega
5: `$.rxSymInvCholEnv`(v, omega)
-- 12. Error: omega chol (@test-omega-chol.R#14) ------------------------------
BLAS/LAPACK routine 'DTRTI2' gave error code -1
1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
2: quasi_label(enquo(object), label, arg = "object")
3: eval_bare(get_expr(quo), get_env(quo))
4: v$omega
5: `$.rxSymInvCholEnv`(v, omega)
== testthat results ===========================================================
OK: 130 SKIPPED: 0 WARNINGS: 0 FAILED: 12
1. Error: omega chol (@test-omega-chol.R#14)
2. Error: omega chol (@test-omega-chol.R#14)
3. Error: omega chol (@test-omega-chol.R#14)
4. Error: omega chol (@test-omega-chol.R#14)
5. Error: omega chol (@test-omega-chol.R#14)
6. Error: omega chol (@test-omega-chol.R#14)
7. Error: omega chol (@test-omega-chol.R#14)
8. Error: omega chol (@test-omega-chol.R#14)
9. Error: omega chol (@test-omega-chol.R#14)
1. ...
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.8.0-9
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building 'RxODE-covariates.Rmd' using rmarkdown
OMP: Warning #96: Cannot form a team with 32 threads, using 3 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
--- finished re-building 'RxODE-covariates.Rmd'
--- re-building 'RxODE-data-frame.Rmd' using rmarkdown
OMP: Warning #96: Cannot form a team with 32 threads, using 3 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
--- finished re-building 'RxODE-data-frame.Rmd'
--- re-building 'RxODE-events.Rmd' using rmarkdown
--- finished re-building 'RxODE-events.Rmd'
--- re-building 'RxODE-intro.Rmd' using rmarkdown
OMP: Warning #96: Cannot form a team with 32 threads, using 3 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
--- finished re-building 'RxODE-intro.Rmd'
--- re-building 'RxODE-mix-lin-ode.Rmd' using rmarkdown
OMP: Warning #96: Cannot form a team with 32 threads, using 3 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
--- finished re-building 'RxODE-mix-lin-ode.Rmd'
--- re-building 'RxODE-shiny.Rmd' using rmarkdown
--- finished re-building 'RxODE-shiny.Rmd'
--- re-building 'RxODE-sim-var.Rmd' using rmarkdown
OMP: Warning #96: Cannot form a team with 32 threads, using 3 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Quitting from lines 249-268 (RxODE-sim-var.Rmd)
Error: processing vignette 'RxODE-sim-var.Rmd' failed with diagnostics:
BLAS/LAPACK routine 'DTRTI2' gave error code -1
--- failed re-building 'RxODE-sim-var.Rmd'
--- re-building 'RxODE-stiff.Rmd' using rmarkdown
OMP: Warning #96: Cannot form a team with 32 threads, using 3 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
--- finished re-building 'RxODE-stiff.Rmd'
--- re-building 'RxODE-syntax.Rmd' using rmarkdown
--- finished re-building 'RxODE-syntax.Rmd'
--- re-building 'RxODE-transit-compartments.Rmd' using rmarkdown
OMP: Warning #96: Cannot form a team with 32 threads, using 3 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
--- finished re-building 'RxODE-transit-compartments.Rmd'
SUMMARY: processing the following file failed:
'RxODE-sim-var.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.8.0-9
Check: installed package size
Result: NOTE
installed size is 13.9Mb
sub-directories of 1Mb or more:
doc 1.6Mb
libs 11.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.8.0-9
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘n1qn1’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 0.8.0-9
Check: use of PKG_*FLAGS in Makefiles
Result: NOTE
PKG_FCFLAGS set in ‘src/Makevars’ without any corresponding files
PKG_FCFLAGS set in ‘src/Makevars.in’ without any corresponding files
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.8.0-9
Check: tests
Result: ERROR
Running ‘testthat.R’ [44s/49s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> Sys.setenv("R_TESTS" = "")
> library(testthat)
> library(RxODE)
> test_check("RxODE")
── 1. Error: omega chol (@test-omega-chol.R#14) ───────────────────────────────
BLAS/LAPACK routine 'DTRTI2' gave error code -1
1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
2: quasi_label(enquo(object), label, arg = "object")
3: eval_bare(get_expr(quo), get_env(quo))
4: v$omega
5: `$.rxSymInvCholEnv`(v, omega)
── 2. Error: omega chol (@test-omega-chol.R#14) ───────────────────────────────
BLAS/LAPACK routine 'DTRTI2' gave error code -1
1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
2: quasi_label(enquo(object), label, arg = "object")
3: eval_bare(get_expr(quo), get_env(quo))
4: v$omega
5: `$.rxSymInvCholEnv`(v, omega)
── 3. Error: omega chol (@test-omega-chol.R#14) ───────────────────────────────
BLAS/LAPACK routine 'DTRTI2' gave error code -1
1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
2: quasi_label(enquo(object), label, arg = "object")
3: eval_bare(get_expr(quo), get_env(quo))
4: v$omega
5: `$.rxSymInvCholEnv`(v, omega)
── 4. Error: omega chol (@test-omega-chol.R#14) ───────────────────────────────
BLAS/LAPACK routine 'DTRTI2' gave error code -1
1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
2: quasi_label(enquo(object), label, arg = "object")
3: eval_bare(get_expr(quo), get_env(quo))
4: v$omega
5: `$.rxSymInvCholEnv`(v, omega)
── 5. Error: omega chol (@test-omega-chol.R#14) ───────────────────────────────
BLAS/LAPACK routine 'DTRTI2' gave error code -1
1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
2: quasi_label(enquo(object), label, arg = "object")
3: eval_bare(get_expr(quo), get_env(quo))
4: v$omega
5: `$.rxSymInvCholEnv`(v, omega)
── 6. Error: omega chol (@test-omega-chol.R#14) ───────────────────────────────
BLAS/LAPACK routine 'DTRTI2' gave error code -1
1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
2: quasi_label(enquo(object), label, arg = "object")
3: eval_bare(get_expr(quo), get_env(quo))
4: v$omega
5: `$.rxSymInvCholEnv`(v, omega)
── 7. Error: omega chol (@test-omega-chol.R#14) ───────────────────────────────
BLAS/LAPACK routine 'DTRTI2' gave error code -1
1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
2: quasi_label(enquo(object), label, arg = "object")
3: eval_bare(get_expr(quo), get_env(quo))
4: v$omega
5: `$.rxSymInvCholEnv`(v, omega)
── 8. Error: omega chol (@test-omega-chol.R#14) ───────────────────────────────
BLAS/LAPACK routine 'DTRTI2' gave error code -1
1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
2: quasi_label(enquo(object), label, arg = "object")
3: eval_bare(get_expr(quo), get_env(quo))
4: v$omega
5: `$.rxSymInvCholEnv`(v, omega)
── 9. Error: omega chol (@test-omega-chol.R#14) ───────────────────────────────
BLAS/LAPACK routine 'DTRTI2' gave error code -1
1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
2: quasi_label(enquo(object), label, arg = "object")
3: eval_bare(get_expr(quo), get_env(quo))
4: v$omega
5: `$.rxSymInvCholEnv`(v, omega)
── 10. Error: omega chol (@test-omega-chol.R#14) ──────────────────────────────
BLAS/LAPACK routine 'DTRTI2' gave error code -1
1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
2: quasi_label(enquo(object), label, arg = "object")
3: eval_bare(get_expr(quo), get_env(quo))
4: v$omega
5: `$.rxSymInvCholEnv`(v, omega)
── 11. Error: omega chol (@test-omega-chol.R#14) ──────────────────────────────
BLAS/LAPACK routine 'DTRTI2' gave error code -1
1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
2: quasi_label(enquo(object), label, arg = "object")
3: eval_bare(get_expr(quo), get_env(quo))
4: v$omega
5: `$.rxSymInvCholEnv`(v, omega)
── 12. Error: omega chol (@test-omega-chol.R#14) ──────────────────────────────
BLAS/LAPACK routine 'DTRTI2' gave error code -1
1: expect_equal(v$omega, mcov) at testthat/test-omega-chol.R:14
2: quasi_label(enquo(object), label, arg = "object")
3: eval_bare(get_expr(quo), get_env(quo))
4: v$omega
5: `$.rxSymInvCholEnv`(v, omega)
══ testthat results ═══════════════════════════════════════════════════════════
OK: 130 SKIPPED: 0 WARNINGS: 0 FAILED: 12
1. Error: omega chol (@test-omega-chol.R#14)
2. Error: omega chol (@test-omega-chol.R#14)
3. Error: omega chol (@test-omega-chol.R#14)
4. Error: omega chol (@test-omega-chol.R#14)
5. Error: omega chol (@test-omega-chol.R#14)
6. Error: omega chol (@test-omega-chol.R#14)
7. Error: omega chol (@test-omega-chol.R#14)
8. Error: omega chol (@test-omega-chol.R#14)
9. Error: omega chol (@test-omega-chol.R#14)
1. ...
Error: testthat unit tests failed
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.8.0-9
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘RxODE-covariates.Rmd’ using rmarkdown
--- finished re-building ‘RxODE-covariates.Rmd’
--- re-building ‘RxODE-data-frame.Rmd’ using rmarkdown
--- finished re-building ‘RxODE-data-frame.Rmd’
--- re-building ‘RxODE-events.Rmd’ using rmarkdown
--- finished re-building ‘RxODE-events.Rmd’
--- re-building ‘RxODE-intro.Rmd’ using rmarkdown
--- finished re-building ‘RxODE-intro.Rmd’
--- re-building ‘RxODE-mix-lin-ode.Rmd’ using rmarkdown
--- finished re-building ‘RxODE-mix-lin-ode.Rmd’
--- re-building ‘RxODE-shiny.Rmd’ using rmarkdown
--- finished re-building ‘RxODE-shiny.Rmd’
--- re-building ‘RxODE-sim-var.Rmd’ using rmarkdown
error: chol(): decomposition failed
Quitting from lines 249-268 (RxODE-sim-var.Rmd)
Error: processing vignette 'RxODE-sim-var.Rmd' failed with diagnostics:
Evaluation error: chol(): decomposition failed.
--- failed re-building ‘RxODE-sim-var.Rmd’
--- re-building ‘RxODE-stiff.Rmd’ using rmarkdown
--- finished re-building ‘RxODE-stiff.Rmd’
--- re-building ‘RxODE-syntax.Rmd’ using rmarkdown
--- finished re-building ‘RxODE-syntax.Rmd’
--- re-building ‘RxODE-transit-compartments.Rmd’ using rmarkdown
--- finished re-building ‘RxODE-transit-compartments.Rmd’
SUMMARY: processing the following file failed:
‘RxODE-sim-var.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.8.0-9
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'SnakeCharmR'
Flavors: r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.8.0-9
Check: whether package can be installed
Result: NOTE
Found the following notes/warnings:
Non-staged installation was used
Flavor: r-release-windows-ix86+x86_64