UCSCXenaTools: Download and Explore Datasets from UCSC Xena Data Hubs

Download and explore datasets from UCSC Xena data hubs, which are a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others. Databases are normalized so they can be combined, linked, filtered, explored and downloaded.

Version: 1.2.1
Depends: R (≥ 3.0)
Imports: httr, readr, methods, utils, dplyr, magrittr, jsonlite, shinydashboard, shiny, DT
Suggests: knitr, rmarkdown, prettydoc, testthat, covr
Published: 2019-04-18
Author: Shixiang Wang ORCID iD [aut, cre], Martin Morgan [aut]
Maintainer: Shixiang Wang <w_shixiang at 163.com>
BugReports: https://github.com/ShixiangWang/UCSCXenaTools/issues
License: GPL-3
URL: https://github.com/ShixiangWang/UCSCXenaTools
NeedsCompilation: no
Materials: README NEWS
CRAN checks: UCSCXenaTools results


Reference manual: UCSCXenaTools.pdf
Vignettes: Download Public Cancer Genomic Data from UCSC Xena Hubs
R API for UCSC Xena Hubs
Package source: UCSCXenaTools_1.2.1.tar.gz
Windows binaries: r-devel: UCSCXenaTools_1.2.1.zip, r-release: UCSCXenaTools_1.2.1.zip, r-oldrel: UCSCXenaTools_1.2.1.zip
OS X binaries: r-release: UCSCXenaTools_1.2.1.tgz, r-oldrel: UCSCXenaTools_1.2.1.tgz
Old sources: UCSCXenaTools archive


Please use the canonical form https://CRAN.R-project.org/package=UCSCXenaTools to link to this page.