msigdbr: MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format

Provides the 'Molecular Signatures Database' (MSigDB) gene sets typically used with the 'Gene Set Enrichment Analysis' (GSEA) software (Subramanian et al. 2005 <doi:10.1073/pnas.0506580102>, Liberzon et al. 2015 <doi:10.1016/j.cels.2015.12.004>) in a standard R data frame with key-value pairs. Included are the original human gene symbols and Entrez IDs as well as the equivalents for various frequently studied model organisms such as mouse, rat, pig, fly, and yeast.

Version: 6.2.1
Depends: R (≥ 3.2.0), dplyr (≥ 0.7.0), tibble
Imports: magrittr, rlang
Suggests: testthat, knitr, rmarkdown
Published: 2018-10-09
Author: Igor Dolgalev [aut, cre]
Maintainer: Igor Dolgalev <igor.dolgalev at nyumc.org>
BugReports: https://github.com/igordot/msigdbr/issues
License: MIT + file LICENSE
URL: https://github.com/igordot/msigdbr
NeedsCompilation: no
Materials: README NEWS
CRAN checks: msigdbr results

Downloads:

Reference manual: msigdbr.pdf
Vignettes: Introduction to the msigdbr package
Package source: msigdbr_6.2.1.tar.gz
Windows binaries: r-devel: msigdbr_6.2.1.zip, r-release: msigdbr_6.2.1.zip, r-oldrel: msigdbr_6.2.1.zip
OS X binaries: r-release: msigdbr_6.2.1.tgz, r-oldrel: msigdbr_6.2.1.tgz
Old sources: msigdbr archive

Reverse dependencies:

Reverse imports: AutoPipe, netgsa

Linking:

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