Provides the 'Molecular Signatures Database' (MSigDB) gene sets typically used with the 'Gene Set Enrichment Analysis' (GSEA) software (Subramanian et al. 2005 <doi:10.1073/pnas.0506580102>, Liberzon et al. 2015 <doi:10.1016/j.cels.2015.12.004>) in a standard R data frame with key-value pairs. Included are the original human gene symbols and Entrez IDs as well as the equivalents for various frequently studied model organisms such as mouse, rat, pig, fly, and yeast.
Version: | 6.2.1 |
Depends: | R (≥ 3.2.0), dplyr (≥ 0.7.0), tibble |
Imports: | magrittr, rlang |
Suggests: | testthat, knitr, rmarkdown |
Published: | 2018-10-09 |
Author: | Igor Dolgalev [aut, cre] |
Maintainer: | Igor Dolgalev <igor.dolgalev at nyumc.org> |
BugReports: | https://github.com/igordot/msigdbr/issues |
License: | MIT + file LICENSE |
URL: | https://github.com/igordot/msigdbr |
NeedsCompilation: | no |
Materials: | README NEWS |
CRAN checks: | msigdbr results |
Reference manual: | msigdbr.pdf |
Vignettes: |
Introduction to the msigdbr package |
Package source: | msigdbr_6.2.1.tar.gz |
Windows binaries: | r-devel: msigdbr_6.2.1.zip, r-release: msigdbr_6.2.1.zip, r-oldrel: msigdbr_6.2.1.zip |
OS X binaries: | r-release: msigdbr_6.2.1.tgz, r-oldrel: msigdbr_6.2.1.tgz |
Old sources: | msigdbr archive |
Reverse imports: | AutoPipe, netgsa |
Please use the canonical form https://CRAN.R-project.org/package=msigdbr to link to this page.