Last updated on 2019-06-18 01:48:30 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.10 | 2.37 | 29.96 | 32.33 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2.10 | 1.83 | 25.03 | 26.86 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.2.10 | 41.16 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.10 | 39.97 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.2.10 | 10.00 | 92.00 | 102.00 | OK | |
| r-patched-linux-x86_64 | 1.2.10 | 2.42 | 30.72 | 33.14 | OK | |
| r-patched-solaris-x86 | 1.2.10 | 65.40 | OK | |||
| r-release-linux-x86_64 | 1.2.10 | 2.42 | 31.09 | 33.51 | OK | |
| r-release-windows-ix86+x86_64 | 1.2.10 | 5.00 | 109.00 | 114.00 | OK | |
| r-release-osx-x86_64 | 1.2.10 | ERROR | ||||
| r-oldrel-windows-ix86+x86_64 | 1.2.10 | 3.00 | 111.00 | 114.00 | OK | |
| r-oldrel-osx-x86_64 | 1.2.10 | OK |
Version: 1.2.10
Check: tests
Result: ERROR
Running ‘runTests.R’ [1s/3s]
Running the tests in ‘tests/runTests.R’ failed.
Last 13 lines of output:
── 4. Failure: getProfileData (@test_cgdsr.R#63) ──────────────────────────────
rownames(...) not identical to make.names(c("TCGA-02-0001-01", "TCGA-02-0003-01")).
Lengths differ: 0 is not 2
══ testthat results ═══════════════════════════════════════════════════════════
OK: 9 SKIPPED: 0 FAILED: 4
1. Failure: getClinicalData (@test_cgdsr.R#44)
2. Failure: getProfileData (@test_cgdsr.R#51)
3. Failure: getProfileData (@test_cgdsr.R#59)
4. Failure: getProfileData (@test_cgdsr.R#63)
Error: testthat unit tests failed
In addition: Warning message:
Placing tests in `inst/tests` is deprecated. Please use `tests/testthat` instead
Execution halted
Flavor: r-release-osx-x86_64
Version: 1.2.10
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘cgdsr.Rnw’
...
10 Relative linear copy-number values
11 Methylation (HM27)
12 Methylation (HM450)
13 Mutations
> getCaseLists(mycgds, "gbm_tcga")[, c(1:2)]
When sourcing ‘cgdsr.R’:
Error: undefined columns selected
Execution halted
Flavor: r-release-osx-x86_64
Version: 1.2.10
Check: re-building of vignette outputs
Result: NOTE
Error(s) in re-building vignettes:
...
--- re-building ‘cgdsr.Rnw’ using Sweave
Please send questions to cbioportal@googlegroups.com
Error: processing vignette 'cgdsr.Rnw' failed with diagnostics:
chunk 5
Error in `[.data.frame`(getCaseLists(mycgds, "gbm_tcga"), , c(1:2)) :
undefined columns selected
--- failed re-building ‘cgdsr.Rnw’
SUMMARY: processing the following file failed:
‘cgdsr.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-osx-x86_64