[aut, cre],
Mahendra Mariadassou [aut],
Stéphane Robin [ctb]The Poisson-lognormal model and variants can be used for a variety of multivariate problems when count data are at play, including principal component analysis for count data (Chiquet, Mariadassou and Robin, 2018 <doi:10.1214/18-AOAS1177>), discriminant analysis and network inference (Chiquet, Mariadassou and Robin, 2018 <arXiv:1806.03120>). Implements variational algorithms to fit such models accompanied with a set of functions for visualization and diagnostic.
| Version: | 0.9.2 |
| Depends: | R (≥ 3.4) |
| Imports: | methods, stats, MASS, parallel, R6, glassoFast, Matrix, Rcpp, nloptr (≥ 1.2.0), igraph, grid, gridExtra, dplyr, tidyr, ggplot2, corrplot, magrittr, biomformat, phyloseq |
| LinkingTo: | Rcpp, RcppArmadillo, nloptr (≥ 1.2.0) |
| Suggests: | knitr, rmarkdown, GGally, testthat, covr, pkgdown |
| Published: | 2019-05-17 |
| Author: | Julien Chiquet [aut, cre],
Mahendra Mariadassou [aut],
Stéphane Robin [ctb] |
| Maintainer: | Julien Chiquet <julien.chiquet at inra.fr> |
| BugReports: | https://github.com/jchiquet/PLNmodels/issues |
| License: | GPL (≥ 3) |
| URL: | https://jchiquet.github.io/PLNmodels/ |
| NeedsCompilation: | yes |
| Citation: | PLNmodels citation info |
| Materials: | NEWS |
| CRAN checks: | PLNmodels results |
| Reference manual: | PLNmodels.pdf |
| Vignettes: |
import PLN PLNLDA PLNnetwork PLNPCA trichoptera |
| Package source: | PLNmodels_0.9.2.tar.gz |
| Windows binaries: | r-devel: PLNmodels_0.9.2.zip, r-release: PLNmodels_0.9.2.zip, r-oldrel: PLNmodels_0.9.2.zip |
| OS X binaries: | r-release: not available, r-oldrel: PLNmodels_0.9.2.tgz |
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