Quartet: Comparison of Phylogenetic Trees Using Quartet and Bipartition Measures

Calculates the number of four-taxon subtrees consistent with a pair of cladograms, calculating the symmetric quartet distance of Bandelt & Dress (1986), Reconstructing the shape of a tree from observed dissimilarity data, Advances in Applied Mathematics, 7, 309-343 <doi:10.1016/0196-8858(86)90038-2>, and using the tqDist algorithm of Sand et al. (2014), tqDist: a library for computing the quartet and triplet distances between binary or general trees, Bioinformatics, 30, 2079–2080 <doi:10.1093/bioinformatics/btu157> for pairs of bifurcating trees.

Version:	1.0.2
Depends:	R (≥ 3.4.0)
Imports:	ape, memoise, Rdpack, Ternary (≥ 1.0), TreeSearch (≥ 0.2.1)
LinkingTo:	Rcpp
Suggests:	bookdown, knitr, phangorn, Rcpp, rmarkdown, testthat, usethis
Published:	2019-03-06
Author:	Martin R. Smith [aut, cre, cph], Andreas Sand [ant], Gerth Stølting Brodal [ant], Rolf Fagerberg [ant], Thomas Mailund [ant], Christian N. S. Pedersen [ant], Jens Johansen [ant], Morten K. Holt [ant]
Maintainer:	Martin R. Smith <martin.smith at durham.ac.uk>
BugReports:	https://github.com/ms609/Quartet/issues
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
Copyright:	Incorporates code modified from tqDist <doi:10.1093/bioinformatics/btu157>.
URL:	https://github.com/ms609/Quartet
NeedsCompilation:	yes
Language:	en-GB
Citation:	Quartet citation info
Materials:	README NEWS
CRAN checks:	Quartet results

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