detrendr: Detrend Images

Detrend fluorescence microscopy image series for fluorescence fluctuation and correlation spectroscopy ('FCS' and 'FFS') analysis. This package contains functionality published in a 2016 paper <doi:10.1093/bioinformatics/btx434> but it has been extended since then with the Robin Hood algorithm and thus contains unpublished work.

Version: 0.6.2
Depends: R (≥ 3.1)
Imports: Rcpp (≥ 1.0.1), RcppParallel, parallel, checkmate (≥ 1.9.3), magrittr (≥ 1.5), dplyr, foreach, doParallel, iterators, purrr, ijtiff (≥ 2.0.0), autothresholdr (≥ 1.3.3), rlang (≥ 0.3.3), stringr, filesstrings (≥ 3.1.3), plyr, glue (≥ 1.3.0), sigmoid, matrixStats, stringi, assertthat, withr (≥ 2.1.0)
LinkingTo: Rcpp (≥ 1.0.1), RcppParallel
Suggests: testthat, knitr, rmarkdown, covr, abind, lattice, pacman, tidyr, graphics, gridExtra, arrayhelpers, MASS, mgcv, spelling
Published: 2019-06-15
Author: Rory Nolan ORCID iD [aut, cre], Luis Alvarez ORCID iD [ctb, cph], Sergi Padilla-Parra ORCID iD [ctb, ths, cph]
Maintainer: Rory Nolan <rorynoolan at>
License: BSD_3_clause + file LICENSE
NeedsCompilation: yes
SystemRequirements: GNU make
Language: en-US
Citation: detrendr citation info
Materials: NEWS
CRAN checks: detrendr results


Reference manual: detrendr.pdf
Vignettes: Batch mode
Detrending single images
Package source: detrendr_0.6.2.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X binaries: r-release: detrendr_0.6.1.tgz, r-oldrel: detrendr_0.6.1.tgz
Old sources: detrendr archive

Reverse dependencies:

Reverse imports: nandb


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