CRAN Package Check Results for Package abn

Last updated on 2019-07-03 01:47:10 CEST.

Check Details

Version: 1.3
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'INLA'
Flavors: r-devel-linux-x86_64-debian-clang, r-patched-linux-x86_64

Version: 1.3
Check: use of SHLIB_OPENMP_*FLAGS in Makefiles
Result: NOTE
     src/Makevars.in: SHLIB_OPENMP_CFLAGS is included in PKG_LIBS but linking is by C++
    Use of these macros is discussed in sect 1.2.1.1 of 'Writing R
    Extensions'. The macros for different languages may differ so the
    matching macro must be used in PKG_CXXFLAGS (etc) and match that used
    in PKG_LIBS (except for Fortran: see the manual).
Flavors: r-devel-linux-x86_64-debian-clang, r-patched-linux-x86_64

Version: 1.3
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'model.bug'
Flavor: r-devel-linux-x86_64-debian-clang

Version: 2.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘INLA’
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-solaris-x86, r-release-linux-x86_64, r-oldrel-osx-x86_64

Version: 1.3
Check: installed package size
Result: NOTE
     installed size is 6.2Mb
     sub-directories of 1Mb or more:
     bootstrapping_example 1.1Mb
     libs 3.5Mb
Flavor: r-devel-windows-ix86+x86_64

Version: 2.0
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-patched-solaris-x86

Version: 2.0
Check: installed package size
Result: NOTE
     installed size is 5.8Mb
     sub-directories of 1Mb or more:
     libs 3.5Mb
Flavors: r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: 'INLA', 'Rgraphviz'
Flavor: r-release-osx-x86_64

Version: 2.0
Check: examples
Result: ERROR
    Running examples in ‘abn-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: linkStrength
    > ### Title: A function that returns the strengths of the edge connections in
    > ### a Bayesian Network learned form observational data.
    > ### Aliases: linkStrength link.strength linkstrength
    > ### Keywords: utilities
    >
    > ### ** Examples
    >
    >
    > dist <- list(a="gaussian", b="gaussian", c="gaussian")
    > data.param <- matrix(c(0,1,0, 0,0,1, 0,0,0), nrow = 3L, ncol = 3L, byrow = TRUE)
    >
    > data.param.var <- matrix(0, nrow = 3L, ncol = 3L)
    > diag(data.param.var) <- c(0.1,0.1,0.1)
    >
    > out <- simulateAbn(data.dists = dist,
    + n.chains = 1, n.adapt = 1000, n.thin = 1, n.iter = 100,
    + data.param = data.param, data.param.var = data.param.var)
    Creation of the BUG file: model.bug
    BUG file created
    Compiling model graph
     Resolving undeclared variables
     Allocating nodes
    Graph information:
     Observed stochastic nodes: 0
     Unobserved stochastic nodes: 3
     Total graph size: 15
    
    Initializing model
    
    >
    > linkStrength(data.param, data.df = out, data.dists = dist,
    + method = "ls", discretization.method = "sturges")
    Error in linkStrength(data.param, data.df = out, data.dists = dist, method = "ls", :
     library Rgraphviz is not available!
    Rgraphviz is available as part of the bioconductor project - see http://www.bioconductor.org/install
    Rgraphviz is required is create.graph=TRUE
    Execution halted
Flavor: r-release-osx-x86_64