Last updated on 2019-07-03 01:47:24 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.4.0.1 | 5.77 | 0.02 | 5.79 | FAIL | |
| r-devel-linux-x86_64-debian-gcc | 0.4.0.1 | 4.68 | 0.01 | 4.69 | FAIL | |
| r-devel-linux-x86_64-fedora-clang | 0.4.0.1 | 5062.34 | WARN | |||
| r-devel-linux-x86_64-fedora-gcc | 0.4.0.1 | 5768.07 | WARN | |||
| r-devel-windows-ix86+x86_64 | 0.4.0.1 | 12.00 | 0.00 | 12.00 | FAIL | |
| r-patched-linux-x86_64 | 0.4.0.1 | 5.57 | 0.01 | 5.58 | FAIL | |
| r-patched-solaris-x86 | 0.4.0.1 | 6003.40 | WARN | |||
| r-release-linux-x86_64 | 0.4.0.1 | 5.44 | 0.02 | 5.46 | FAIL | |
| r-release-windows-ix86+x86_64 | 0.4.0.1 | 13.00 | 253.00 | 266.00 | OK | |
| r-release-osx-x86_64 | 0.4.0.1 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 0.4.0.1 | 7.00 | 0.00 | 7.00 | OK | |
| r-oldrel-osx-x86_64 | 0.4.0.1 | OK |
Version: 0.4.0.1
Check: tests
Result: ERROR
Running 'testthat.R' [10m/11m]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(infer)
>
> suppressWarnings(RNGversion("3.5.0"))
> test_check("infer")
Setting `type = "permute"` in `generate()`.
Killed
Flavors: r-devel-linux-x86_64-debian-clang, r-release-linux-x86_64
Version: 0.4.0.1
Check: re-building of vignette outputs
Result: FAIL
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.4.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [10m/13m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(infer)
>
> suppressWarnings(RNGversion("3.5.0"))
> test_check("infer")
Setting `type = "permute"` in `generate()`.
Killed
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.4.0.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘chisq_test.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
--- finished re-building ‘chisq_test.Rmd’
sh: line 1: 5921 Segmentation fault (core dumped) '/data/gannet/ripley/R/R-clang/bin/R' --vanilla --slave > '/tmp/RtmpNnv3Os/file12b97374fece' 2>&1 < '/tmp/RtmpNnv3Os/file12b93e9e8042'
--- re-building ‘flights_examples.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
*** caught segfault ***
address 0x2ee6, cause 'memory not mapped'
Traceback:
1: grid.newpage()
2: print.ggplot(x)
3: print(x)
4: normal_print(x)
5: knit_print.default(x, ...)
6: knit_print(x, ...)
7: withVisible(knit_print(x, ...))
8: fun(x, options = options)
9: value_fun(ev$value, ev$visible)
10: withVisible(value_fun(ev$value, ev$visible))
11: withCallingHandlers(withVisible(value_fun(ev$value, ev$visible)), warning = wHandler, error = eHandler, message = mHandler)
12: handle(pv <- withCallingHandlers(withVisible(value_fun(ev$value, ev$visible)), warning = wHandler, error = eHandler, message = mHandler))
13: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos, debug = debug, last = i == length(out), use_try = stop_on_error != 2L, keep_warning = keep_warning, keep_message = keep_message, output_handler = output_handler, include_timing = include_timing)
14: evaluate::evaluate(...)
15: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options))
16: in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options)))
17: block_exec(params)
18: call_block(x)
19: process_group.block(group)
20: process_group(group)
21: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { setwd(wd) cat(res, sep = "\n", file = output %n% "") message("Quitting from lines ", paste(current_lines(i), collapse = "-"), " (", knit_concord$get("infile"), ") ") })
22: process_file(text, output)
23: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet, encoding = encoding)
24: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), ...)
25: vweave_rmarkdown(...)
26: engine$weave(file, quiet = quiet, encoding = enc)
27: doTryCatch(return(expr), name, parentenv, handler)
28: tryCatchOne(expr, names, parentenv, handlers[[1L]])
29: tryCatchList(expr, classes, parentenv, handlers)
30: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
31: tools:::.buildOneVignette("flights_examples.Rmd", "/data/gannet/ripley/R/packages/tests-clang/infer.Rcheck/vign_test/infer", TRUE, FALSE, "flights_examples", "UTF-8", "/tmp/RtmpNnv3Os/file12b92a42e926.rds")
An irrecoverable exception occurred. R is aborting now ...
--- re-building ‘mtcars_examples.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
--- finished re-building ‘mtcars_examples.Rmd’
Warning: elapsed-time limit of 30 minutes reached for sub-process
--- re-building ‘observed_stat_examples.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Execution halted
--- re-building ‘two_sample_t.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
--- finished re-building ‘two_sample_t.Rmd’
SUMMARY: processing the following files failed:
‘flights_examples.Rmd’ ‘observed_stat_examples.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.4.0.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘chisq_test.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
--- finished re-building ‘chisq_test.Rmd’
Warning: elapsed-time limit of 30 minutes reached for sub-process
--- re-building ‘flights_examples.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Execution halted
--- re-building ‘mtcars_examples.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
--- finished re-building ‘mtcars_examples.Rmd’
Warning: elapsed-time limit of 30 minutes reached for sub-process
--- re-building ‘observed_stat_examples.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Execution halted
--- re-building ‘two_sample_t.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
--- finished re-building ‘two_sample_t.Rmd’
SUMMARY: processing the following files failed:
‘flights_examples.Rmd’ ‘observed_stat_examples.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.4.0.1
Check: re-building of vignette outputs
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
Warning: Check to make sure the conditions have been met for the theoretical method. {infer} currently does not check these for you.
>
> # Overlay theoretical distribution on top of randomized t-statistics
> mtcars %>%
+ dplyr::mutate(am = factor(am)) %>%
+ specify(mpg ~ am) %>% # alt: response = mpg, explanatory = am
+ hypothesize(null = "independence") %>%
+ generate(reps = 100, type = "permute") %>%
+ calculate(stat = "t", order = c("1", "0")) %>%
+ visualize(method = "both")
Warning: Check to make sure the conditions have been met for the theoretical method. {infer} currently does not check these for you.
>
>
>
>
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed: 15.12 0.27 15.47 NA NA
> grDevices::dev.off()
null device
1
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-devel-windows-ix86+x86_64
Version: 0.4.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [10m/10m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(infer)
>
> suppressWarnings(RNGversion("3.5.0"))
> test_check("infer")
Setting `type = "permute"` in `generate()`.
Killed
Flavor: r-patched-linux-x86_64
Version: 0.4.0.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘devtools’
Flavor: r-patched-solaris-x86
Version: 0.4.0.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘chisq_test.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
--- finished re-building ‘chisq_test.Rmd’
Cpu Limit Exceeded - core dumped
--- re-building ‘flights_examples.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
--- re-building ‘mtcars_examples.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
--- finished re-building ‘mtcars_examples.Rmd’
Cpu Limit Exceeded - core dumped
--- re-building ‘observed_stat_examples.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
--- re-building ‘two_sample_t.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
--- finished re-building ‘two_sample_t.Rmd’
SUMMARY: processing the following files failed:
‘flights_examples.Rmd’ ‘observed_stat_examples.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86