SKAT: SNP-Set (Sequence) Kernel Association Test

Functions for kernel-regression-based association tests including Burden test, SKAT and SKAT-O. These methods aggregate individual SNP score statistics in a SNP set and efficiently compute SNP-set level p-values.

Depends: R (≥ 2.13.0)
Published: 2017-08-03
Author: Seunggeun (Shawn) Lee, with contributions from Larisa Miropolsky and Michael Wu
Maintainer: Seunggeun (Shawn) Lee <leeshawn at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
CRAN checks: SKAT results


Reference manual: SKAT.pdf
Vignettes: SKAT
Package source: SKAT_1.3.2.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X binaries: r-release: SKAT_1.3.2.1.tgz, r-oldrel: SKAT_1.3.2.1.tgz
Old sources: SKAT archive

Reverse dependencies:

Reverse depends: FSTpackage, GenoScan, LGEWIS, LGRF, Mega2R, WGScan
Reverse imports: GBJ, iECAT, MetaSKAT, SMUT, zfa
Reverse suggests: BGData, FastKM, seqMeta, seqminer


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