outbreaker2: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data

Bayesian reconstruction of disease outbreaks using epidemiological and genetic information. Jombart T, Cori A, Didelot X, Cauchemez S, Fraser C and Ferguson N. 2014. <doi:10.1371/journal.pcbi.1003457>. Campbell, F, Cori A, Ferguson N, Jombart T. 2019. <doi:10.1371/journal.pcbi.1006930>.

Version: 1.1.0
Depends: R (≥ 3.0.0)
Imports: utils, methods, stats, grDevices, Rcpp, ape, ggplot2, magrittr, visNetwork
LinkingTo: Rcpp
Suggests: coda, microbenchmark, testthat, knitr, rmarkdown, igraph, epicontacts
Published: 2019-06-13
Author: Thibaut Jombart [aut], Finlay Campbell [aut, cre], Rich Fitzjohn [aut], Gerry Tonkin-Hill [ctb], Alexis Robert [ctb]
Maintainer: Finlay Campbell <f.campbell15 at imperial.ac.uk>
License: MIT + file LICENSE
NeedsCompilation: yes
SystemRequirements: C++11
Citation: outbreaker2 citation info
Materials: README NEWS
CRAN checks: outbreaker2 results


Reference manual: outbreaker2.pdf
Vignettes: Rcpp API
Package source: outbreaker2_1.1.0.tar.gz
Windows binaries: r-devel: outbreaker2_1.1.0.zip, r-release: outbreaker2_1.1.0.zip, r-oldrel: outbreaker2_1.1.0.zip
OS X binaries: r-release: outbreaker2_1.1.0.tgz, r-oldrel: outbreaker2_1.1.0.tgz
Old sources: outbreaker2 archive


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