Infers the V genotype of an individual from immunoglobulin (Ig)
repertoire sequencing data (AIRR-Seq, Rep-Seq). Includes detection of
any novel alleles. This information is then used to correct existing V
allele calls from among the sample sequences.
Citations:
Gadala-Maria, et al (2015) <doi:10.1073/pnas.1417683112>.
Version: |
0.3.1 |
Depends: |
R (≥ 3.2.5), ggplot2 (≥ 2.0.0) |
Imports: |
alakazam (≥ 0.2.11), dplyr (≥ 0.7.0), doParallel, foreach, graphics, gridExtra, gtools, iterators, lazyeval, parallel, rlang, shazam (≥ 0.1.10), stats, stringi, tidyr |
Suggests: |
knitr, testthat |
Published: |
2018-10-19 |
Author: |
Daniel Gadala-Maria [aut],
Susanna Marquez [aut],
Moriah Cohen [aut],
Gur Yaari [aut],
Jason Vander Heiden [ctb, cre],
Steven Kleinstein [aut, cph] |
Maintainer: |
Jason Vander Heiden <jason.vanderheiden at yale.edu> |
BugReports: |
https://bitbucket.org/kleinstein/tigger/issues |
License: |
CC BY-SA 4.0 |
URL: |
http://tigger.readthedocs.io |
NeedsCompilation: |
no |
Citation: |
tigger citation info |
Materials: |
README NEWS |
CRAN checks: |
tigger results |