CRAN Package Check Results for Package BayesSUR

Last updated on 2019-10-31 00:50:50 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-gcc 1.0-2 145.81 81.80 227.61 OK
r-devel-linux-x86_64-fedora-clang 1.0-2 445.37 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0-2 409.58 OK
r-patched-solaris-x86 1.0-2 305.80 ERROR
r-release-windows-ix86+x86_64 1.0-2 325.00 182.00 507.00 NOTE
r-release-osx-x86_64 1.0-0 NOTE
r-oldrel-osx-x86_64 1.0-0 NOTE

Check Details

Version: 1.0-2
Check: installed package size
Result: NOTE
     installed size is 16.1Mb
     sub-directories of 1Mb or more:
     data 1.5Mb
     libs 13.9Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-windows-ix86+x86_64

Version: 1.0-2
Check: examples
Result: ERROR
    Running examples in ‘BayesSUR-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: BayesSUR
    > ### Title: main function of the package
    > ### Aliases: BayesSUR BayesSUR-package
    >
    > ### ** Examples
    >
    > data("example_eQTL", package = "BayesSUR")
    > hyperpar <- list( a_w = 2 , b_w = 5 )
    >
    > fit <- BayesSUR(Y = example_eQTL[["blockList"]][[1]],
    + X = example_eQTL[["blockList"]][[2]],
    + data = example_eQTL[["data"]], outFilePath = tempdir(),
    + nIter = 100, burnin = 50, nChains = 2, gammaPrior = "hotspot",
    + hyperpar = hyperpar, tmpFolder = "tmp/" )
    BayesSUR -- Bayesian Seemingly Unrelated Regression Modelling
    Using OpenMP
    Reading input files ... ... successfull!
    Clearing and initialising output files
    Init RNG engine .. DONE !
    Initialising the (SUR) MCMC Chain ... ... DONE!
    Drafting the output files with the start of the chain ... DONE!
    
    Starting 2 (parallel) chain(s) for 100 iterations:
    
    warning: inv_sympd(): given matrix is not symmetric
    
    error: inv_sympd(): matrix is singular or not positive definite
    
    error: matrix multiplication: incompatible matrix dimensions: 0x0 and 36x1
    terminate called after throwing an instance of 'std::logic_error'
     what(): matrix multiplication: incompatible matrix dimensions: 0x0 and 36x1
Flavor: r-patched-solaris-x86

Version: 1.0-0
Check: installed package size
Result: NOTE
     installed size is 15.9Mb
     sub-directories of 1Mb or more:
     data 1.5Mb
     libs 13.7Mb
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.0-0
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘BDgraph’ ‘data.table’ ‘gRbase’ ‘plyr’ ‘scrime’
     All declared Imports should be used.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64