CRAN Package Check Results for Package OpenMx

Last updated on 2019-10-31 00:51:01 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.14.11 1058.67 350.41 1409.08 OK
r-devel-linux-x86_64-debian-gcc 2.14.11 910.02 278.26 1188.28 OK
r-devel-linux-x86_64-fedora-clang 2.14.11 1959.06 NOTE
r-devel-linux-x86_64-fedora-gcc 2.14.11 2013.29 NOTE
r-devel-windows-ix86+x86_64 2.14.11 2349.00 607.00 2956.00 NOTE
r-patched-linux-x86_64 2.14.11 1014.21 341.52 1355.73 OK
r-patched-solaris-x86 2.14.11 3210.10 ERROR
r-release-linux-x86_64 2.14.11 1015.61 346.80 1362.41 OK
r-release-windows-ix86+x86_64 2.14.11 2318.00 571.00 2889.00 NOTE
r-release-osx-x86_64 2.14.11 NOTE
r-oldrel-windows-ix86+x86_64 2.14.11 1699.00 541.00 2240.00 NOTE
r-oldrel-osx-x86_64 2.14.11 NOTE

Additional issues

rchk

Check Details

Version: 2.14.11
Check: installed package size
Result: NOTE
     installed size is 198.2Mb
     sub-directories of 1Mb or more:
     R 2.5Mb
     libs 188.1Mb
     models 4.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 2.14.11
Check: top-level files
Result: NOTE
    ‘configure’: /bin/bash is not portable
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.14.11
Check: examples
Result: ERROR
    Running examples in ‘OpenMx-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: mxModelAverage
    > ### Title: Information-Theoretic Model-Averaging and Multimodel Inference
    > ### Aliases: mxModelAverage omxAkaikeWeights omxAICWeights
    >
    > ### ** Examples
    >
    > require(OpenMx)
    > data(demoOneFactor)
    > factorModel1 <- mxModel(
    + "OneFactor1",
    + mxMatrix(
    + "Full", 5, 1, values=0.8,
    + labels=paste("a",1:5,sep=""),
    + free=TRUE, name="A"),
    + mxMatrix(
    + "Full", 5, 1, values=1,
    + labels=paste("u",1:5,sep=""),
    + free=TRUE, name="Udiag"),
    + mxMatrix(
    + "Symm", 1, 1, values=1,
    + free=FALSE, name="L"),
    + mxAlgebra(vec2diag(Udiag),name="U"),
    + mxAlgebra(A %*% L %*% t(A) + U, name="R"),
    + mxExpectationNormal(
    + covariance = "R",
    + dimnames = names(demoOneFactor)),
    + mxFitFunctionML(),
    + mxData(cov(demoOneFactor), type="cov", numObs=500))
    > factorFit1 <- mxRun(factorModel1)
    Running OneFactor1 with 10 parameters
    Error: C stack usage 203920532 is too close to the limit
    Error: The job for model 'OneFactor1' exited abnormally with the error message: User interrupt
    Execution halted
Flavor: r-patched-solaris-x86

Version: 2.14.11
Check: tests
Result: ERROR
     Running ‘testthat.R’ [31m/19m]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(OpenMx)
     To take full advantage of multiple cores, use:
     mxOption(key='Number of Threads', value=parallel::detectCores()) #now
     Sys.setenv(OMP_NUM_THREADS=parallel::detectCores()) #before library(OpenMx)
     >
     > test_check("OpenMx")
     ── 1. Error: (unknown) (@test-ACELRTCI20160808.R#603) ─────────────────────────
     The job for model 'AEModelTwin' exited abnormally with the error message: Non-conformable matrices in vertical concatenation (rbind). First argument has 2 cols, and argument #2 has 0 cols.
     1: cmpInterval(ace, "C.UB", "c", "ubound") at testthat/test-ACELRTCI20160808.R:603
     2: ACECI(model) at testthat/test-ACELRTCI20160808.R:592
     3: mxRun(AEModelTwin, silent = silent) at testthat/test-ACELRTCI20160808.R:116
     4: runHelper(model, frontendStart, intervals, silent, suppressWarnings, unsafe, checkpoint,
     useSocket, onlyFrontend, useOptimizer, beginMessage)
     5: processErrorConditions(model, unsafe, suppressWarnings)
     6: stop(paste("The job for model", omxQuotes(model@name), "exited abnormally with the error message:",
     output$error), call. = FALSE)
Flavor: r-patched-solaris-x86

Version: 2.14.11
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘Rmpi’
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64