Last updated on 2019-10-31 00:51:04 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.9.2 | 112.73 | 376.08 | 488.81 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.9.2 | 87.01 | 278.75 | 365.76 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.9.2 | 593.89 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.9.2 | 590.62 | OK | |||
| r-devel-windows-ix86+x86_64 | 0.9.2 | 273.00 | 732.00 | 1005.00 | OK | |
| r-patched-linux-x86_64 | 0.9.2 | 91.94 | 350.73 | 442.67 | OK | |
| r-patched-solaris-x86 | 0.9.2 | 757.00 | WARN | |||
| r-release-linux-x86_64 | 0.9.2 | 89.93 | 349.20 | 439.13 | OK | |
| r-release-windows-ix86+x86_64 | 0.9.2 | 261.00 | 686.00 | 947.00 | OK | |
| r-release-osx-x86_64 | 0.9.2 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 0.9.2 | 183.00 | 660.00 | 843.00 | OK | |
| r-oldrel-osx-x86_64 | 0.9.2 | WARN |
Version: 0.9.2
Check: installed package size
Result: NOTE
installed size is 9.9Mb
sub-directories of 1Mb or more:
doc 1.6Mb
libs 7.4Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 0.9.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘Import_data.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
1 samples were dropped from the abundance matrix for lack of associated covariates.
--- finished re-building ‘Import_data.Rmd’
--- re-building ‘PLN.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
corrplot 0.84 loaded
Attaching package: 'dplyr'
The following object is masked from 'package:gridExtra':
combine
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Warning: Transformation introduced infinite values in continuous x-axis
Quitting from lines 186-190 (PLN.Rmd)
Error: processing vignette 'PLN.Rmd' failed with diagnostics:
unused argument (options = options)
--- failed re-building ‘PLN.Rmd’
--- re-building ‘PLNLDA.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Warning in kable_markdown(x = c("3302930", "3307296", "3348069", "3394105", :
The table should have a header (column names)
Warning in kable_markdown(x = c("Che", "Hyc", "Hym", "Hys", "Psy", "Aga", :
The table should have a header (column names)
Warning: glm.fit: algorithm did not converge
Warning: glm.fit: fitted rates numerically 0 occurred
--- finished re-building ‘PLNLDA.Rmd’
--- re-building ‘PLNPCA.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
corrplot 0.84 loaded
Warning in kable_markdown(x = c("Che", "Hyc", "Hym", "Hys", "Psy", "Aga", :
The table should have a header (column names)
Warning in kable_markdown(x = c("-1.606816", "3.835259", "7.562147", "6.244162", :
The table should have a header (column names)
Warning: Transformation introduced infinite values in continuous x-axis
Warning: Removed 584 rows containing missing values (geom_point).
--- finished re-building ‘PLNPCA.Rmd’
--- re-building ‘PLNnetwork.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Warning: Transformation introduced infinite values in continuous x-axis
Warning: Removed 588 rows containing missing values (geom_point).
--- finished re-building ‘PLNnetwork.Rmd’
--- re-building ‘Trichoptera.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘Trichoptera.Rmd’
SUMMARY: processing the following file failed:
‘PLN.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.9.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘Import_data.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
1 samples were dropped from the abundance matrix for lack of associated covariates.
--- finished re-building ‘Import_data.Rmd’
--- re-building ‘PLN.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
corrplot 0.84 loaded
Attaching package: 'dplyr'
The following object is masked from 'package:gridExtra':
combine
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Warning: Transformation introduced infinite values in continuous x-axis
Quitting from lines 186-190 (PLN.Rmd)
Error: processing vignette 'PLN.Rmd' failed with diagnostics:
unused argument (options = options)
--- failed re-building ‘PLN.Rmd’
--- re-building ‘PLNLDA.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Warning in kable_markdown(x = c("1738153", "1740638", "1763806", "1789813", :
The table should have a header (column names)
Warning in kable_markdown(x = c("Che", "Hyc", "Hym", "Hys", "Psy", "Aga", :
The table should have a header (column names)
Warning: glm.fit: algorithm did not converge
Warning: glm.fit: fitted rates numerically 0 occurred
--- finished re-building ‘PLNLDA.Rmd’
--- re-building ‘PLNPCA.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
corrplot 0.84 loaded
Warning in kable_markdown(x = c("Che", "Hyc", "Hym", "Hys", "Psy", "Aga", :
The table should have a header (column names)
Warning in kable_markdown(x = c("-1.596876", "3.888390", "7.624847", "6.250576", :
The table should have a header (column names)
Warning: Transformation introduced infinite values in continuous x-axis
Warning: Removed 584 rows containing missing values (geom_point).
--- finished re-building ‘PLNPCA.Rmd’
--- re-building ‘PLNnetwork.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Warning: Transformation introduced infinite values in continuous x-axis
Warning: Removed 589 rows containing missing values (geom_point).
--- finished re-building ‘PLNnetwork.Rmd’
--- re-building ‘Trichoptera.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘Trichoptera.Rmd’
SUMMARY: processing the following file failed:
‘PLN.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-osx-x86_64
Version: 0.9.2
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
1 samples were dropped from the abundance matrix for lack of associated covariates.
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
corrplot 0.84 loaded
Attaching package: 'dplyr'
The following object is masked from 'package:gridExtra':
combine
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Warning: Transformation introduced infinite values in continuous x-axis
Quitting from lines 186-190 (PLN.Rmd)
Error: processing vignette 'PLN.Rmd' failed with diagnostics:
unused argument (options = options)
Execution halted
Flavor: r-oldrel-osx-x86_64