CRAN Package Check Results for Package PLNmodels

Last updated on 2019-10-31 00:51:04 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9.2 112.73 376.08 488.81 OK
r-devel-linux-x86_64-debian-gcc 0.9.2 87.01 278.75 365.76 OK
r-devel-linux-x86_64-fedora-clang 0.9.2 593.89 NOTE
r-devel-linux-x86_64-fedora-gcc 0.9.2 590.62 OK
r-devel-windows-ix86+x86_64 0.9.2 273.00 732.00 1005.00 OK
r-patched-linux-x86_64 0.9.2 91.94 350.73 442.67 OK
r-patched-solaris-x86 0.9.2 757.00 WARN
r-release-linux-x86_64 0.9.2 89.93 349.20 439.13 OK
r-release-windows-ix86+x86_64 0.9.2 261.00 686.00 947.00 OK
r-release-osx-x86_64 0.9.2 WARN
r-oldrel-windows-ix86+x86_64 0.9.2 183.00 660.00 843.00 OK
r-oldrel-osx-x86_64 0.9.2 WARN

Check Details

Version: 0.9.2
Check: installed package size
Result: NOTE
     installed size is 9.9Mb
     sub-directories of 1Mb or more:
     doc 1.6Mb
     libs 7.4Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.9.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘Import_data.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    1 samples were dropped from the abundance matrix for lack of associated covariates.
    --- finished re-building ‘Import_data.Rmd’
    
    --- re-building ‘PLN.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    corrplot 0.84 loaded
    
    Attaching package: 'dplyr'
    
    The following object is masked from 'package:gridExtra':
    
     combine
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Warning: Transformation introduced infinite values in continuous x-axis
    Quitting from lines 186-190 (PLN.Rmd)
    Error: processing vignette 'PLN.Rmd' failed with diagnostics:
    unused argument (options = options)
    --- failed re-building ‘PLN.Rmd’
    
    --- re-building ‘PLNLDA.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in kable_markdown(x = c("3302930", "3307296", "3348069", "3394105", :
     The table should have a header (column names)
    Warning in kable_markdown(x = c("Che", "Hyc", "Hym", "Hys", "Psy", "Aga", :
     The table should have a header (column names)
    Warning: glm.fit: algorithm did not converge
    Warning: glm.fit: fitted rates numerically 0 occurred
    --- finished re-building ‘PLNLDA.Rmd’
    
    --- re-building ‘PLNPCA.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    corrplot 0.84 loaded
    Warning in kable_markdown(x = c("Che", "Hyc", "Hym", "Hys", "Psy", "Aga", :
     The table should have a header (column names)
    Warning in kable_markdown(x = c("-1.606816", "3.835259", "7.562147", "6.244162", :
     The table should have a header (column names)
    Warning: Transformation introduced infinite values in continuous x-axis
    Warning: Removed 584 rows containing missing values (geom_point).
    --- finished re-building ‘PLNPCA.Rmd’
    
    --- re-building ‘PLNnetwork.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning: Transformation introduced infinite values in continuous x-axis
    Warning: Removed 588 rows containing missing values (geom_point).
    --- finished re-building ‘PLNnetwork.Rmd’
    
    --- re-building ‘Trichoptera.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘Trichoptera.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘PLN.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.9.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘Import_data.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    1 samples were dropped from the abundance matrix for lack of associated covariates.
    --- finished re-building ‘Import_data.Rmd’
    
    --- re-building ‘PLN.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    corrplot 0.84 loaded
    
    Attaching package: 'dplyr'
    
    The following object is masked from 'package:gridExtra':
    
     combine
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Warning: Transformation introduced infinite values in continuous x-axis
    Quitting from lines 186-190 (PLN.Rmd)
    Error: processing vignette 'PLN.Rmd' failed with diagnostics:
    unused argument (options = options)
    --- failed re-building ‘PLN.Rmd’
    
    --- re-building ‘PLNLDA.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in kable_markdown(x = c("1738153", "1740638", "1763806", "1789813", :
     The table should have a header (column names)
    Warning in kable_markdown(x = c("Che", "Hyc", "Hym", "Hys", "Psy", "Aga", :
     The table should have a header (column names)
    Warning: glm.fit: algorithm did not converge
    Warning: glm.fit: fitted rates numerically 0 occurred
    --- finished re-building ‘PLNLDA.Rmd’
    
    --- re-building ‘PLNPCA.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    corrplot 0.84 loaded
    Warning in kable_markdown(x = c("Che", "Hyc", "Hym", "Hys", "Psy", "Aga", :
     The table should have a header (column names)
    Warning in kable_markdown(x = c("-1.596876", "3.888390", "7.624847", "6.250576", :
     The table should have a header (column names)
    Warning: Transformation introduced infinite values in continuous x-axis
    Warning: Removed 584 rows containing missing values (geom_point).
    --- finished re-building ‘PLNPCA.Rmd’
    
    --- re-building ‘PLNnetwork.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning: Transformation introduced infinite values in continuous x-axis
    Warning: Removed 589 rows containing missing values (geom_point).
    --- finished re-building ‘PLNnetwork.Rmd’
    
    --- re-building ‘Trichoptera.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘Trichoptera.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘PLN.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.9.2
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    1 samples were dropped from the abundance matrix for lack of associated covariates.
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    corrplot 0.84 loaded
    
    Attaching package: 'dplyr'
    
    The following object is masked from 'package:gridExtra':
    
     combine
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Warning: Transformation introduced infinite values in continuous x-axis
    Quitting from lines 186-190 (PLN.Rmd)
    Error: processing vignette 'PLN.Rmd' failed with diagnostics:
    unused argument (options = options)
    Execution halted
Flavor: r-oldrel-osx-x86_64