CRAN Package Check Results for Package RxODE

Last updated on 2019-10-31 00:51:07 CET.

Check Details

Version: 0.9.1-7
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'installr'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.9.1-7
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'SnakeCharmR'
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9.1-7
Check: installed package size
Result: NOTE
     installed size is 6.6Mb
     sub-directories of 1Mb or more:
     libs 5.4Mb
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9.1-4
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘installr’
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.9.1-4
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘RxODE-cmt.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘RxODE-cmt.Rmd’
    
    --- re-building ‘RxODE-covariates.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    udunits system database from /usr/local/share/udunits
    --- finished re-building ‘RxODE-covariates.Rmd’
    
    --- re-building ‘RxODE-data-frame.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    udunits system database from /usr/local/share/udunits
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    --- finished re-building ‘RxODE-data-frame.Rmd’
    
    --- re-building ‘RxODE-events.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘RxODE-events.Rmd’
    
    --- re-building ‘RxODE-intro.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘RxODE-intro.Rmd’
    
    --- re-building ‘RxODE-model-types.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 65-68 (RxODE-model-types.Rmd)
    Error: processing vignette 'RxODE-model-types.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘RxODE-model-types.Rmd’
    
    --- re-building ‘RxODE-rxUse.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘RxODE-rxUse.Rmd’
    
    --- re-building ‘RxODE-shiny.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘RxODE-shiny.Rmd’
    
    --- re-building ‘RxODE-stiff.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘RxODE-stiff.Rmd’
    
    --- re-building ‘RxODE-syntax.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘RxODE-syntax.Rmd’
    
    --- re-building ‘RxODE-transit-compartments.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘RxODE-transit-compartments.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘RxODE-model-types.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.9.1-4
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    udunits system database from /usr/local/share/udunits
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 65-68 (RxODE-model-types.Rmd)
    Error: processing vignette 'RxODE-model-types.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-oldrel-osx-x86_64