Functions for processing, analysis and visualization of Hydrogen Deuterium eXchange monitored by Mass Spectrometry experiments (HDX-MS). 'HaDeX' introduces a new standardized and reproducible workflow for the analysis of the HDX-MS data, including novel uncertainty intervals. Additionally, it covers data exploration, quality control and generation of publication-quality figures. All functionalities are also available in the in-built 'Shiny' app.
Version: | 1.0 |
Depends: | R (≥ 3.0) |
Imports: | data.table, dplyr, DT, ggplot2, gsubfn, latex2exp, reshape2, readr, readxl, shiny, stringr, tidyr |
Suggests: | spelling, covr, digest, knitr, pander, rmarkdown, shinycssloaders, testthat, vdiffr |
Published: | 2019-08-30 |
Author: | Weronika Puchala |
Maintainer: | Weronika Puchala <puchala.weronika at gmail.com> |
License: | GPL-3 |
NeedsCompilation: | no |
Language: | en-US |
Materials: | README ChangeLog |
CRAN checks: | HaDeX results |
Reference manual: | HaDeX.pdf |
Vignettes: |
HaDeX: Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data |
Package source: | HaDeX_1.0.tar.gz |
Windows binaries: | r-devel: HaDeX_1.0.zip, r-release: HaDeX_1.0.zip, r-oldrel: HaDeX_1.0.zip |
OS X binaries: | r-release: HaDeX_1.0.tgz, r-oldrel: HaDeX_1.0.tgz |
Old sources: | HaDeX archive |
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