PACVr: Plastome Assembly Coverage Visualization

Visualizes the coverage depth of a complete plastid genome as well as the equality of its inverted repeat regions in relation to the circular, quadripartite genome structure and the location of individual genes. For more information, please see Gruenstaeudl and Jenke (2019) <doi:10.1101/697821>.

Version: 0.8.2
Depends: R (≥ 3.3.0)
Imports: RCircos (≥ 1.2.0), optparse (≥ 1.6.0), genbankr (≥ 1.2.1), BiocGenerics (≥ 0.20.0)
OS_type: unix
Published: 2019-09-13
Author: Michael Gruenstaeudl [aut, cre], Nils Jenke [ctb]
Maintainer: Michael Gruenstaeudl <m.gruenstaeudl at>
License: BSD 3-clause License + file LICENSE
NeedsCompilation: no
SystemRequirements: mosdepth
Citation: PACVr citation info
CRAN checks: PACVr results


Reference manual: PACVr.pdf
Vignettes: PACVr
Package source: PACVr_0.8.2.tar.gz
Windows binaries: r-devel: not available, r-release: not available, r-oldrel: not available
OS X binaries: r-release: not available, r-oldrel: not available
Old sources: PACVr archive


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