Plot idiograms of several karyotypes having a set of dataframes for chromosome data and optionally mark data. Includes also a function to plot holocentrics and its marks supporting micrometers and Mb. Marks can have square or dot form, its legend (label) can be drawn inline or to the right of karyotypes. It is possible to calculate chromosome indices by Levan et al. (1964) <doi:10.1111/j.1601-5223.1964.tb01953.x> , karyotype indices of Watanabe et al. (1999) <doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986) and Levan et al. (1964).
| Version: | 1.8.1 |
| Depends: | R (≥ 3.0) |
| Imports: | crayon, knitr, kableExtra, prettydoc, badger, rvcheck, rmarkdown, plyr |
| Suggests: | RCurl, ggpubr, ggtree, phytools, ggplot2, treeio |
| Published: | 2019-10-29 |
| Author: | Fernando Roa [aut, cre], Mariana PC Telles [ctb] |
| Maintainer: | Fernando Roa <froao at unal.edu.co> |
| BugReports: | https://gitlab.com/ferroao/idiogramFISH/issues |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://ferroao.gitlab.io/manualidiogramfish/, https://ferroao.gitlab.io/idiogramFISH |
| NeedsCompilation: | no |
| Citation: | idiogramFISH citation info |
| Materials: | README NEWS |
| CRAN checks: | idiogramFISH results |
| Reference manual: | idiogramFISH.pdf |
| Vignettes: |
1. Plotting monocentric chromosomes 2. Plotting holocentric chromosomes 3. Groups of chromosomes 4. Plotting alongside phylogeny 5. Human karyotype idiogramFISH: Installation and minimal examples |
| Package source: | idiogramFISH_1.8.1.tar.gz |
| Windows binaries: | r-devel: idiogramFISH_1.8.1.zip, r-release: idiogramFISH_1.8.1.zip, r-oldrel: idiogramFISH_1.7.1.zip |
| OS X binaries: | r-release: idiogramFISH_1.6.3.tgz, r-oldrel: idiogramFISH_1.6.3.tgz |
| Old sources: | idiogramFISH archive |
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