Computes the pathway deregulation score for a given set of metabolites, selects the pathways with the highest mutual information and then uses them to build a classifier. F. Alakwaa, S. Huang, and L. Garmire (2018) <doi:10.1101/283408>.
| Version: | 0.1.0 |
| Depends: | R (≥ 3.4.0) |
| Imports: | caret, corrplot, devtools, dplyr, e1071, gbm, ggplot2, glmnet, hash, Hmisc, infotheo, Matrix, pamr, R.oo, princurve, pROC, randomForest, reshape2, RWeka, stringr |
| Suggests: | testthat |
| Published: | 2018-07-30 |
| Author: | Fadhl Alakwaa [aut, cre], Sijia Huang [aut] |
| Maintainer: | Fadhl Alakwaa <falakwaa at hawaii.edu> |
| BugReports: | https://github.com/lanagarmire/lilikoi/issues |
| License: | GPL-2 |
| URL: | https://github.com/lanagarmire/lilikoi |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | lilikoi results |
| Reference manual: | lilikoi.pdf |
| Package source: | lilikoi_0.1.0.tar.gz |
| Windows binaries: | r-devel: lilikoi_0.1.0.zip, r-release: lilikoi_0.1.0.zip, r-oldrel: lilikoi_0.1.0.zip |
| OS X binaries: | r-release: lilikoi_0.1.0.tgz, r-oldrel: lilikoi_0.1.0.tgz |
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