polymapR: Linkage Analysis in Outcrossing Polyploids

Creation of linkage maps in polyploid species from marker dosage scores of an F1 cross from two heterozygous parents. Currently works for outcrossing diploid, autotriploid, autotetraploid and autohexaploid species, as well as segmental allotetraploids. Methods are described in a manuscript of Bourke et al. (2018) <doi:10.1093/bioinformatics/bty371>.

Version: 1.0.19
Depends: R (≥ 3.2.0)
Imports: igraph, doParallel, foreach, knitr, combinat, MDSMap
Suggests: rmarkdown, Hmisc, LPmerge, reshape2, RColorBrewer
Published: 2019-02-01
Author: Peter Bourke [aut, cre], Geert van Geest [aut]
Maintainer: Peter Bourke <pbourkey at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL]
NeedsCompilation: no
CRAN checks: polymapR results


Reference manual: polymapR.pdf
Vignettes: How to use polymapR
Package source: polymapR_1.0.19.tar.gz
Windows binaries: r-devel: polymapR_1.0.19.zip, r-release: polymapR_1.0.19.zip, r-oldrel: polymapR_1.0.19.zip
OS X binaries: r-release: polymapR_1.0.19.tgz, r-oldrel: polymapR_1.0.19.tgz
Old sources: polymapR archive


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