Sets up and executes a SelAC model (Selection on Amino acids and codons) for testing the presence of selection in amino acid or codon among a set of genes on a fixed phylogeny. Beaulieu et al (2019) <doi:10.1093/molbev/msy222>.
| Version: | 1.7.0 |
| Imports: | ape, deSolve, nloptr, nnet, data.table, expm, MASS, Matrix, methods, parallel, phangorn, seqinr, statmod, zoo, RColorBrewer |
| Suggests: | testthat, igraph |
| Published: | 2019-02-28 |
| Author: | Jeremy Beaulieu [aut, cre], JJ Chai [aut], Mike Gilchrist [aut], Cedric Landerer [aut], Graham Derryberry [aut], Brian O'Meara [aut] |
| Maintainer: | Jeremy Beaulieu <jbeaulieu at nimbios.org> |
| License: | GPL-2 | GPL-3 [expanded from: GPL] |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | selac results |
| Reference manual: | selac.pdf |
| Package source: | selac_1.7.0.tar.gz |
| Windows binaries: | r-devel: selac_1.7.0.zip, r-release: selac_1.7.0.zip, r-oldrel: selac_1.7.0.zip |
| OS X binaries: | r-release: selac_1.7.0.tgz, r-oldrel: selac_1.7.0.tgz |
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