Last updated on 2019-11-26 00:51:45 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.4 | 2.34 | 25.05 | 27.39 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.4 | 2.02 | 20.05 | 22.07 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.4 | 34.18 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.4 | 33.69 | OK | |||
| r-devel-windows-ix86+x86_64 | 0.1.4 | 14.00 | 48.00 | 62.00 | OK | |
| r-devel-windows-ix86+x86_64-gcc8 | 0.1.4 | 7.00 | 41.00 | 48.00 | OK | |
| r-patched-linux-x86_64 | 0.1.4 | 1.87 | 24.62 | 26.49 | OK | |
| r-patched-solaris-x86 | 0.1.4 | 47.10 | ERROR | |||
| r-release-linux-x86_64 | 0.1.4 | 2.00 | 24.73 | 26.73 | OK | |
| r-release-windows-ix86+x86_64 | 0.1.4 | 7.00 | 36.00 | 43.00 | OK | |
| r-release-osx-x86_64 | 0.1.4 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 0.1.4 | 3.00 | 52.00 | 55.00 | OK | |
| r-oldrel-osx-x86_64 | 0.1.4 | OK |
Version: 0.1.4
Check: examples
Result: ERROR
Running examples in ‘bigdist-Ex.R’ failed
The error most likely occurred in:
> ### Name: bigdist
> ### Title: Read or Create a distance matrix on disk
> ### Aliases: bigdist
>
> ### ** Examples
>
> # basics of 'bigdist'
> # create a random matrix
> set.seed(1)
> amat <- matrix(rnorm(1e3), ncol = 10)
> td <- tempdir()
>
> # create a bigdist object with FBM (file-backed matrix) on disk
> temp <- bigdist(mat = amat, file = file.path(td, "temp_ex1"))
----
Location: /tmp/Rtmpd8a4gN/working_dir/Rtmpsea4rV/temp_ex1_100_float.bk
Size on disk: 0 GB
Computing distances ...
Completed!
----
> temp
$fbm
A Filebacked Big Matrix of type 'float' with 100 rows and 100 columns.
attr(,"class")
[1] "bigdist"
> temp$fbm$backingfile
[1] "/tmp/Rtmpd8a4gN/working_dir/Rtmpsea4rV/temp_ex1_100_float.bk"
> temp$fbm[1, 2]
[1] 4.631341
>
> # connect to FBM on disk as a bigdist object
> temp2 <- bigdist(file = file.path(td, "temp_ex1_100_float"))
> temp2
$fbm
A Filebacked Big Matrix of type 'float' with 100 rows and 100 columns.
attr(,"class")
[1] "bigdist"
> temp2$fbm[1,2]
*** caught segfault ***
address fd100190, cause 'invalid permissions'
Traceback:
1: extractMat(x$address, i, j)
2: extract_matrix(x, transform_ind(i, n), transform_ind(j, m))
3: temp2$fbm[1, 2]
4: temp2$fbm[1, 2]
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-patched-solaris-x86