Last updated on 2019-11-26 00:51:47 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.8.1 | 7.39 | 166.43 | 173.82 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.8.1 | 5.98 | 124.21 | 130.19 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.8.1 | 205.39 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.8.1 | 211.00 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 0.8.1 | 38.00 | 274.00 | 312.00 | ERROR | |
| r-devel-windows-ix86+x86_64-gcc8 | 0.8.1 | 26.00 | 209.00 | 235.00 | ERROR | |
| r-patched-linux-x86_64 | 0.8.1 | 7.21 | 158.35 | 165.56 | ERROR | |
| r-patched-solaris-x86 | 0.8.1 | 422.90 | ERROR | |||
| r-release-linux-x86_64 | 0.8.1 | 6.40 | 161.73 | 168.13 | ERROR | |
| r-release-windows-ix86+x86_64 | 0.8.1 | 30.00 | 281.00 | 311.00 | OK | |
| r-release-osx-x86_64 | 0.8.1 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 0.8.1 | 11.00 | 267.00 | 278.00 | ERROR | |
| r-oldrel-osx-x86_64 | 0.8.1 | WARN |
Version: 0.8.1
Check: dependencies in R code
Result: NOTE
Missing or unexported object: 'skimr::skim_with_defaults'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-release-linux-x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.8.1
Check: examples
Result: ERROR
Running examples in 'codebook-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: codebook
> ### Title: Generate rmarkdown codebook
> ### Aliases: codebook
>
> ### ** Examples
>
> # will generate figures in a temporary directory
> old_base_dir <- knitr::opts_knit$get("base.dir")
> knitr::opts_knit$set(base.dir = tempdir())
> on.exit(knitr::opts_knit$set(base.dir = old_base_dir))
> data("bfi")
> bfi <- bfi[, c("BFIK_open_1", "BFIK_open_1")]
> md <- codebook(bfi, survey_repetition = "single", metadata_table = FALSE)
No missing values.
Warning: 'skimr::skim_to_wide' is deprecated.
Use 'skim()' instead.
See help("Deprecated")
Error: 'skim_with_defaults' is not an exported object from 'namespace:skimr'
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.8.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building 'codebook.Rmd' using rmarkdown
Registered S3 methods overwritten by 'codebook':
method from
as_factor.character forcats
as_factor.numeric forcats
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Quitting from lines 86-87 (codebook.Rmd)
Error: processing vignette 'codebook.Rmd' failed with diagnostics:
Could not summarise item age. Error: 'skim_with_defaults' is not an exported object from 'namespace:skimr'
--- failed re-building 'codebook.Rmd'
--- re-building 'codebook_qualtrics.Rmd' using rmarkdown
Registered S3 methods overwritten by 'codebook':
method from
as_factor.character forcats
as_factor.numeric forcats
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
--- finished re-building 'codebook_qualtrics.Rmd'
--- re-building 'codebook_sav.Rmd' using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Registered S3 methods overwritten by 'codebook':
method from
as_factor.character forcats
as_factor.numeric forcats
--- finished re-building 'codebook_sav.Rmd'
--- re-building 'codebook_tutorial.Rmd' using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
--- finished re-building 'codebook_tutorial.Rmd'
SUMMARY: processing the following file failed:
'codebook.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.8.1
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘graphics’ ‘jsonlite’ ‘pander’ ‘rlang’
All declared Imports should be used.
Missing or unexported object: ‘skimr::skim_with_defaults’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86
Version: 0.8.1
Check: data for non-ASCII characters
Result: NOTE
Note: found 65 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 0.8.1
Check: examples
Result: ERROR
Running examples in ‘codebook-Ex.R’ failed
The error most likely occurred in:
> ### Name: codebook
> ### Title: Generate rmarkdown codebook
> ### Aliases: codebook
>
> ### ** Examples
>
> # will generate figures in a temporary directory
> old_base_dir <- knitr::opts_knit$get("base.dir")
> knitr::opts_knit$set(base.dir = tempdir())
> on.exit(knitr::opts_knit$set(base.dir = old_base_dir))
> data("bfi")
> bfi <- bfi[, c("BFIK_open_1", "BFIK_open_1")]
> md <- codebook(bfi, survey_repetition = "single", metadata_table = FALSE)
No missing values.
Warning: 'skimr::skim_to_wide' is deprecated.
Use 'skim()' instead.
See help("Deprecated")
Error: 'skim_with_defaults' is not an exported object from 'namespace:skimr'
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-solaris-x86, r-oldrel-windows-ix86+x86_64
Version: 0.8.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘codebook.Rmd’ using rmarkdown
Registered S3 methods overwritten by 'codebook':
method from
as_factor.character forcats
as_factor.numeric forcats
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Quitting from lines 86-87 (codebook.Rmd)
Error: processing vignette 'codebook.Rmd' failed with diagnostics:
Could not summarise item age. Error: 'skim_with_defaults' is not an exported object from 'namespace:skimr'
--- failed re-building ‘codebook.Rmd’
--- re-building ‘codebook_qualtrics.Rmd’ using rmarkdown
Registered S3 methods overwritten by 'codebook':
method from
as_factor.character forcats
as_factor.numeric forcats
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
--- finished re-building ‘codebook_qualtrics.Rmd’
--- re-building ‘codebook_sav.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Registered S3 methods overwritten by 'codebook':
method from
as_factor.character forcats
as_factor.numeric forcats
--- finished re-building ‘codebook_sav.Rmd’
--- re-building ‘codebook_tutorial.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
--- finished re-building ‘codebook_tutorial.Rmd’
SUMMARY: processing the following file failed:
‘codebook.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8
Version: 0.8.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘codebook.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Registered S3 methods overwritten by 'codebook':
method from
as_factor.character forcats
as_factor.numeric forcats
Quitting from lines 86-87 (codebook.Rmd)
Error: processing vignette 'codebook.Rmd' failed with diagnostics:
Could not summarise scale BFIK_consc. Error: 'skim_with_defaults' is not an exported object from 'namespace:skimr'
--- failed re-building ‘codebook.Rmd’
--- re-building ‘codebook_qualtrics.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Registered S3 methods overwritten by 'codebook':
method from
as_factor.character forcats
as_factor.numeric forcats
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
--- finished re-building ‘codebook_qualtrics.Rmd’
--- re-building ‘codebook_sav.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Registered S3 methods overwritten by 'codebook':
method from
as_factor.character forcats
as_factor.numeric forcats
--- finished re-building ‘codebook_sav.Rmd’
--- re-building ‘codebook_tutorial.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
--- finished re-building ‘codebook_tutorial.Rmd’
SUMMARY: processing the following file failed:
‘codebook.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.8.1
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘graphics’ ‘jsonlite’ ‘pander’ ‘rlang’
All declared Imports should be used.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 0.8.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘codebook.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Registered S3 methods overwritten by 'codebook':
method from
as_factor.character forcats
as_factor.numeric forcats
Quitting from lines NA-15 (codebook.Rmd)
Error: processing vignette 'codebook.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘codebook.Rmd’
--- re-building ‘codebook_qualtrics.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Registered S3 methods overwritten by 'codebook':
method from
as_factor.character forcats
as_factor.numeric forcats
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning in if (grepl("labelled", class(x[[i]]))) { :
the condition has length > 1 and only the first element will be used
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
Warning: Unknown or uninitialised column: 'foreign'.
--- finished re-building ‘codebook_qualtrics.Rmd’
--- re-building ‘codebook_sav.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Registered S3 methods overwritten by 'codebook':
method from
as_factor.character forcats
as_factor.numeric forcats
--- finished re-building ‘codebook_sav.Rmd’
--- re-building ‘codebook_tutorial.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
--- finished re-building ‘codebook_tutorial.Rmd’
SUMMARY: processing the following file failed:
‘codebook.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-osx-x86_64
Version: 0.8.1
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Quitting from lines 86-87 (codebook.Rmd)
Error: processing vignette 'codebook.Rmd' failed with diagnostics:
Could not summarise item age. Error: 'skim_with_defaults' is not an exported object from 'namespace:skimr'
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64
Version: 0.8.1
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines NA-15 (codebook.Rmd)
Error: processing vignette 'codebook.Rmd' failed with diagnostics:
cannot open the connection
Execution halted
Flavor: r-oldrel-osx-x86_64